Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g873 ATGGTATGCAGCGGCTGCATAAGGAATGTGATTGTTCAAGCTGGCCACATTGGACAATCAGCTGTGAGAAGCGTTCGATTAAGAGCAATCTATAGAAGTTTGAATGCAAATATTGGATTGAGGTATACCTGGAATCGACAGTTTAGGGGCAGTGTAAAGATGATGGTTGATACGGCGAAGGGGGAACCTATTATCAATGTGTTGCCAGAGAAAGAGGACGATGGTGGCTATGCCAGTGGAGGATGGAAAAGTGAAGACGGAAAACTGAGCTGTGGGTATTCAAGTTTCAGGGGAAAGAGAGCTAGCATGGAGGATTTCTATGATGTAAAAATGTCCAAGATTGATGGGCAAACAGTTTGCCTTTTTGGAATATTTGATGGTCATGGTGGTTCTCGTGCTGCGGAGTTTTTGAAGGAGCATCTCTTTGAGAATTTGATGAAGCATCCAGAGTTCATGACAAATACCAAATTGGCTATAAGTGAAACATATCAACAAACTGACATGAATTTTCTGGATGCTGAAAGAGATACTTACCGAGATGATGGTTCTACTGCTTCCACAGCAGTGCTTGTTGGTAACCATCTCTATGTTGCCAATGTTGGAGATTCGAGGGCTGTGATATCAAAAGCTGGAAAAGCAATCCCTCTTTCTGAGGATCATAAACCAAATAGAAGTGACGAGCGAAAAAGAATTGAAAATGCTGGAGGTGTTGTGATGTGGGCAGGAACTTGGAGGGTGGGAGGAGTCTTAGCAATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATATGTTGTGGCAGAACCCGAGATCCAGGATCAAGAGGTTGATGAAGAACTTGAATTACTTGTGCTTGCTAGTGATGGACTCTGGGACGTTGTACCTAACGAGGATGCCATTGCACTTGCTCGAACAGAAGAAGAACCCGAGGCAGGGGCCCGGAAATTGACGGAGACTGCTTTTACCCGGGGGAGTGCCGACAACATAACCTGCATCGTGGTCAGGTTCCACCATGAGAAGGTTGATCCCGATCCACCTAACATGGAGCAGGCTTAG 1056 45.36 MVCSGCIRNVIVQAGHIGQSAVRSVRLRAIYRSLNANIGLRYTWNRQFRGSVKMMVDTAKGEPIINVLPEKEDDGGYASGGWKSEDGKLSCGYSSFRGKRASMEDFYDVKMSKIDGQTVCLFGIFDGHGGSRAAEFLKEHLFENLMKHPEFMTNTKLAISETYQQTDMNFLDAERDTYRDDGSTASTAVLVGNHLYVANVGDSRAVISKAGKAIPLSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQYVVAEPEIQDQEVDEELELLVLASDGLWDVVPNEDAIALARTEEEPEAGARKLTETAFTRGSADNITCIVVRFHHEKVDPDPPNMEQA* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19543375 19551472 + Vvi16g873 Vvi16g873 778522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g873 351 SUPERFAMILY PP2C-like 87 337 IPR036457 -
Vvi16g873 351 Gene3D - 82 342 IPR036457 -
Vvi16g873 351 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 42 348 - -
Vvi16g873 351 SMART PP2C_SIG_2 72 336 IPR001932 -
Vvi16g873 351 Pfam Protein phosphatase 2C 92 329 IPR001932 -
Vvi16g873 351 PANTHER ALPHABET, ISOFORM E-RELATED 42 348 - -
Vvi16g873 351 SMART PP2C_4 80 334 IPR001932 -
Vvi16g873 351 CDD PP2Cc 90 336 IPR001932 -
Vvi16g873 351 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Vvi16g873 351 ProSiteProfiles PPM-type phosphatase domain profile. 90 336 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g873 K17506 - vvi:100262129 691.034