Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g875 ATGGAGTGCAATAAGGATGAGGCCTCTAGAGCGAAAGATATTGCTGTGAGGAAGTTCAGAGAGAAAGACTTTTTGGGTGCAAAGAAATTTGTTTTAAAGGCCCAAAATTTGTATCCTGGGCTTGAGGGTCTTTCTCAGATGTTAACTATACTTGATGTGTACATCTCAGCTGAGAAGAAAGTAAGTGGAGAAGTGGATTGGTATGGGATACTTGGTGTAAGCCCCTTGGCTGATGAGGAGACTGTGAAGAAACAATACAGGAAGCTGGCTCTTATACTTCATCCTGATAAAAACAAGTCCATTGGTGCAGATGGTGCATTTAAGCTTGTTTCAGAGGCCTGGAGTTTATTATCCGATAAGGGCAAGAGATTATCATATAACCAGAAGAGGGATGTGAAAGGATCGCAGCAGAAAGTTCCTAGCCAGAATGGGGTTCCATCAGCACCTGCTAGTGCAAATGGTGTTCACAATTTTACCAGTGAAGAACTGATACCTTCTGGACTGTTTGCAATCGATGCAAGACACAGTATGAATATCTCAGGATTTATCTCAATCACACTCTGCTTTGTCCCAATTGTCATGAGGCGTTTTTGGCTTTGGAGAAGGCTCCACCTTCAAATGTTCCAAAATCATCCAAGTGGTCTTCCCGCCAGCATCCTCAGAGTTCAAATCATTTTAAAAAGAAGAGAGGTCGTGAGGAAAAGAATAGATGATGATGGCACCAATGGTTATGGAGGGAACATTGTAAATCAAACAGCCACTGGAAATGGAGGAACCGGTGCCCCCAATAGTTATAAAGAGATGTCACTGTTTGAAATTCGGAATATGCTGATGGAAAAGGCACGGAAAGAAATTCGCAATAAACTTTCAGAATGGAGCTCAACAGCTGCAGCCAAGGCTGGGAACAAAGAAAAAGAGAAGGTGAAACTGAAAGAAAAACAAAAAGGTGCAAAGTTTTCTCCTGGCACTTCAGCTGCTGATACAGATAGCGAGGCCCCTGCGCCTATGGCAATCAATGTTCCAGATTCTGATTTTCATGATTTTGATTTGGACCGAACTGAAAGTTCCTTTGGAGATAATCAGGTCTGGTCCGCATATGATGATGATGATGGGATGCCTCGGTTCTATGCACTGATTCACAAAGTGATCTCTTTGAAACCATTCAAGATGAAGATCAGTTGGCTTAACTCTAAAAGCAACAGCGAATTTGGTTCAGGGGATGTCTGGGCCCTTTATAGAAACTGGTCCCCAGATTGGAATGAAAATACTCCGGATGAAGTGATACACAAGTATGACATGGTGGAAGTCCTTGATGACTATAATGAGGATTATGGTGTATCTGTTACTCCTCTCATCAAGGTTGCTGGTTTTAGAACAATATTTCACAGGCATGAGGACCCCAAGGAAGTCAGGACAGTTCTGAGAGAAGAGATGTTTTGTTTCTCTCATCAGGTTCCTAACCGCTTGCTTACAGGCCAAGAAGCTCAAAATGCTCCAAAGGGTTGCCGTGAGCTAGATCCTGCAGCTACCCCTTTAGAACTTCTTCAGATAATTACAGAAGCTACTGAGGCACCGGTTGTGAATGTTGGAAAGGATGAGGAAGGGAGGTTGCAAAGTGCCCAGCAAATTAAGCTAGACAAAATGGTGGACTATGCTGCAAAATCTAATGATGGGGAGATTGTAGAGAACAGTGAACAAATCAAGTCAGAAGAGATAATGGGGCATGCCAAAGTAGCCAGGGAAGCAGGTGGTGGATAA 1758 43.06 MECNKDEASRAKDIAVRKFREKDFLGAKKFVLKAQNLYPGLEGLSQMLTILDVYISAEKKVSGEVDWYGILGVSPLADEETVKKQYRKLALILHPDKNKSIGADGAFKLVSEAWSLLSDKGKRLSYNQKRDVKGSQQKVPSQNGVPSAPASANGVHNFTSEELIPSGLFAIDARHSMNISGFISITLCFVPIVMRRFWLWRRLHLQMFQNHPSGLPASILRVQIILKRREVVRKRIDDDGTNGYGGNIVNQTATGNGGTGAPNSYKEMSLFEIRNMLMEKARKEIRNKLSEWSSTAAAKAGNKEKEKVKLKEKQKGAKFSPGTSAADTDSEAPAPMAINVPDSDFHDFDLDRTESSFGDNQVWSAYDDDDGMPRFYALIHKVISLKPFKMKISWLNSKSNSEFGSGDVWALYRNWSPDWNENTPDEVIHKYDMVEVLDDYNEDYGVSVTPLIKVAGFRTIFHRHEDPKEVRTVLREEMFCFSHQVPNRLLTGQEAQNAPKGCRELDPAATPLELLQIITEATEAPVVNVGKDEEGRLQSAQQIKLDKMVDYAAKSNDGEIVENSEQIKSEEIMGHAKVAREAGGG* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19568864 19573229 + Vvi16g875 Vvi16g875 778524

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g875 585 MobiDBLite consensus disorder prediction 130 152 - -
Vvi16g875 585 Pfam Domain of unknown function (DUF3444) 405 494 IPR024593 -
Vvi16g875 585 Pfam Domain of unknown function (DUF3444) 336 400 IPR024593 -
Vvi16g875 585 PANTHER HEAT SHOCK PROTEIN-LIKE 254 404 - -
Vvi16g875 585 PANTHER HEAT SHOCK PROTEIN-LIKE 406 528 - -
Vvi16g875 585 PANTHER HEAT SHOCK PROTEIN-LIKE 1 153 - -
Vvi16g875 585 SMART dnaj_3 65 122 IPR001623 -
Vvi16g875 585 Pfam DnaJ domain 66 127 IPR001623 -
Vvi16g875 585 SUPERFAMILY Chaperone J-domain 60 126 IPR036869 -
Vvi16g875 585 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vvi16g875 585 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vvi16g875 585 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vvi16g875 585 MobiDBLite consensus disorder prediction 128 152 - -
Vvi16g875 585 MobiDBLite consensus disorder prediction 293 338 - -
Vvi16g875 585 CDD DnaJ 66 119 IPR001623 -
Vvi16g875 585 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vvi16g875 585 PANTHER BNAC03G44070D PROTEIN 1 153 - -
Vvi16g875 585 PANTHER BNAC03G44070D PROTEIN 406 528 - -
Vvi16g875 585 PANTHER BNAC03G44070D PROTEIN 254 404 - -
Vvi16g875 585 MobiDBLite consensus disorder prediction 300 316 - -
Vvi16g875 585 Gene3D DnaJ domain 64 169 IPR036869 -
Vvi16g875 585 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g875 - - - vvi:100263793 640.188
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g875 . . . . . . . . . . . . Car02g00917 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g00624 . . Lac11g0143 Hepe06g0780 . Lcy12g0122 . . . . . . . . . . Cme09g01971
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003895 2 1 3 3 3 1 2 1 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45