Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g876 ATGTATTTTGTAGACTTCTACTTCGGTCACATTAGAATGAGGAGAAATTTGTTAAAGGTTTGGAAGGCATTTGGATTCCTGAAAGCGGGGAATTCGCAGAATAAGGAAACAATGACAAGGGTTAAGAATGATGATTGTGATGCTACCACTAATGGCCTCTCTGATGAATGTTACAAGTCTTGGATGATGGAACACCCATCAGCAATAACCTCGTTTGATCAGATGGTGAGCAAAGCAAAAGGGAAGTCCATCGTTGTGTTTTTAGATTATGATGGGACCCTCTCACCAATAGTGGACGATCCTGATCTTGCTTTCATGTCTGATGAGATGCGTTCCGCTGTACGTGAAATCGCAAAAAACTTTCCAACCGCCATTATTAGTGGTCGAAGCCGAGAGAAGGTGTATGAATTTGTACAGTTAACAGAGGTATACTATGCTGGGAGCCATGGGATGGACATAATGGGTCCACCACACCAAGTTAAATCCTGTGATGCGCAGTACCAAATCAAAGCCCTTGATAAACAGGGCCATGAAGTAATCCTATTCCAACCCGCTAAAGATTTCTTGCCTGCAATCCAAAAGATATCCAATGTGTTGGAGGAAAAAACCCAGAAAATAGAAGGTGCCCTGATAGAAGATAATAGATTTTGCATTTCAGTGCATTTTCGTAGAGTTCATGAAAAGGACTATGACACCTTGGAGGAGAAGGTGAAGTCTGTGGTTAAAAATTATCCCGAATTTCGCCTGACAAGTGGTAAAAAGGTCATGGAAATTCGACCATCCATCAAATGGGACAAAGGGTGTGCGTTGGAGTATTTACTGGACACTCTAGGGTTCAGTGACTCGAGCGATGTTCTCCCATTGTACATTGGAGATGATCGAACTGATGAAGATGCTTTTAAGGTTATACGGAGGAGAGGAGAAGGGTATCCGATCATTGTGTCGTCCACTCCAAAGGAAACCAAAGCTGCGTATTCTCTCCGCGACCCATCAGAGGTTTTATCCTTCTTAACTCATCTTGCAAAATGGAGGAACTCATTTTCTGGTCATTCTGTTGATTAG 1062 42.47 MYFVDFYFGHIRMRRNLLKVWKAFGFLKAGNSQNKETMTRVKNDDCDATTNGLSDECYKSWMMEHPSAITSFDQMVSKAKGKSIVVFLDYDGTLSPIVDDPDLAFMSDEMRSAVREIAKNFPTAIISGRSREKVYEFVQLTEVYYAGSHGMDIMGPPHQVKSCDAQYQIKALDKQGHEVILFQPAKDFLPAIQKISNVLEEKTQKIEGALIEDNRFCISVHFRRVHEKDYDTLEEKVKSVVKNYPEFRLTSGKKVMEIRPSIKWDKGCALEYLLDTLGFSDSSDVLPLYIGDDRTDEDAFKVIRRRGEGYPIIVSSTPKETKAAYSLRDPSEVLSFLTHLAKWRNSFSGHSVD* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19584304 19587018 + Vvi16g876 Vvi16g876 778525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g876 353 SUPERFAMILY HAD-like 85 343 IPR036412 -
Vvi16g876 353 Coils Coil 192 212 - -
Vvi16g876 353 Pfam Trehalose-phosphatase 87 331 IPR003337 GO:0003824|GO:0005992
Vvi16g876 353 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 86 306 IPR006379 -
Vvi16g876 353 CDD HAD_TPP 85 333 - -
Vvi16g876 353 TIGRFAM T6PP: trehalose-phosphatase 82 341 IPR003337 GO:0003824|GO:0005992
Vvi16g876 353 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 348 - -
Vvi16g876 353 Gene3D - 84 178 IPR023214 -
Vvi16g876 353 Gene3D - 190 351 IPR023214 -
Vvi16g876 353 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 348 IPR044651 GO:0004805|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g876 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - vvi:100258645 689.493
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g734 Vvi16g876 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32