Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g877 ATGGGTGGTCATGAGGGCTGGGCACAGCCCAATGGCTTTTCTCCAAATGGTCTATTGCCCAATGAAGCTGCCTCTGTGACTAGAGCACTTGACCAGGAGAGGTTGTCACTTGCTGAAGAGAGAACTAAACAGCTGATTGCCTGCATTCAGCCTAACCAACCCTCTGAGGAACGCAGAGAGGCTGTTGCGAGTTATGTGAAGAGTCTCATCATGAAATGCTTCTCTTGTAAGGTGTTCCCCTTTGGGTCTGTACCCCTCAAGACTTATCTACCAGATGGGGACATTGATCTAACAGCATTCAGTAAAAGCCCAAATTTGAAGGACACTTGGGCTAATGAGGTACGGGATATTCTAGAGAGAGAAGAAAAGAGTGGGGATGCTGAATTCCGTGTAAAAGAAGTTCAATACATCCAGGCAGAGGTCAAGATAATAAAGTGCCTTGTGGAAAATATCGTAGTGGACATATCCTTTAACCAGCTTGGTGGGTTATGTACTCTTTGCTTCCTTGAGGAGGTTGACCATTTGATAAGCCAAAAGCACCTGTTCAAGCGCAGCATAATATTGATTAAAGCTTGGTGTTACTATGAGAGCCGTATTTTGGGCGCTCATCATGGACTTATTTCGACTTACGCTCTGGAGACATTGGTTTTGTACATATTTCGTGTTTTCAATAATTCCTTTGCTGGGCCACTTGAGGTACTTTATCGTTTCCTGGAGTTCTTCAGTAAATTCGACTGGGAAAATTATTGTGTTAGTCTGTGGGGTCCAGTACCCATTAGTTCGCTTCCTGATGTGACAGCGGACCCTCCTCGAAAGGATAGCGGGGAATTATTACTCAGCAAATTATTTCTTGATGCTTGTAGCTCTGTATATGCTGTTTTGCCCGTTGGACAAGAAAATCCAGAGCAGCCCTTCATTTCCAAATATTTTAATGTCATTGATCCATTGCGTACAAACAATAATCTTGGACGCAGTGTCAGTAAAGGTAACTTTTTTAGGATTCGTAGTGCTTTTGCTTTTGGGGCTCAAAGACTAGCCCGATTACTTGATTGTCCAAAGGACAATGTCATTGCGGAAGTCAACCAGTTTTTCATGAACACATGGGAAAGACATGGGAAAGGCGATCGCCCTGATGCACCTAGTCCTGATCTTTATGGTTTGCAACAGGCTAGCTCGAATCATATTGAAGGATCTGACGGTTTCAGGAGTAATCCAAACAGAAAGAAAATGAAAGAGAATTCTATTAGTCACGAGTCTGAGGTTGAGGTGACTCGTGGTTCTCATGCTTCTCACAGTGTTTCTTCACAGCATGGCAACTATTCATCAAAACAAATTTCTAGGACTGCTGCTGTATATGCTGCTTCTCATACTCAAAACCAGAAGGCCTATGCCAACTTAACTAGCTCAATTACTGCCGATCAGAATCATCAGACTGCACAGAGTACAAGTTCCAATGAGAACATTCATACTGACAAGGGGAGAAGTTCTAGACCAGATTACTTGGGAAATGAAGTGCATGCCAGATATCAGTTTGCCAGGACGCATTCTAGTCCTGAGCTTACTGATGCATCTAGCGATGTTCCATCCAGAGGAAGGCGTAACAGGACATCAGAAACAGGAAAAGGCCAGACAGTTCCTGCAAGGTCTGATTATAGCAGGAGAAGAAACTTGGGTTCTGAAGTTCCAGACTACCATAGTGCTAGATCTTCAACTGAAAATTCACCATCTTCAAGGCATGGCTCATCCCATCGAAGTATTGATGCTGCTGTCAATTCAAATAGTGCTTCTAATAGCTATCATGGTGAATCTGGCTTAAGTACCGTAGGAGAAGACCATCCTTCTGTTGCTGAAACCATGCAGATGCACCAGGAAGAGCAAGATCGTGTAAACATGATGGCTTCCAGGGTTCATGGTTTTAGTGGACAGATACAGATGCCAGTAAATCTAGCTTCTGCTCATCTGCCGGTTCCAATATCGCCTTCTATTTTAGCTTCACTAGGACATGCTCACAGAAATGTGGCTGGTATGATTCCAACAAATATGGCTTCATTTGGGCCTCCTTGGGGCTCAAATATTCATTATTCTCAAGGTTTAACTTCTTTGCCAGTTTCTCAATATTTTCCTAGTGTAGGAATGACCTCAAATAAAGAAATGGTTGAACCGCTTGATGATAATTTGGGATCAACTGAAATTAATCAGGAGAATAATGATCATGGTTTCTGGTCTGAGCGTGACTCAGATTCCATGAGAGACTTTGATCCTGATAATGGAAATTCAGTGGGGTTTAACATTGGTACCTCATCTCGACCAAGCAGCTCTGACAATTATTTAATGAAAGCTCAAGGAGTAACAAAAGGAAACAGAGGGTTAATCAGGGAAAACTATGGCGACAATTCCCAATATCAAAACATCAAAGGAACTGATGTTTACTCTGCTGCCAGTTCACGATCTATACCTGCTTCCCAGGCCCCTCCTGCAAGAAGCAAGTTGTCTTCTGAAGGTTCCTGGGATGAATCACCTTCAAAGGTTTCAAGGTCAGCAAGGGACAGACGGGGAAGGAGAACTGCTCCTTCTGCAGAACCTTCTACCACGTATAGGTCAGGTAAGAATGGGCGGCAATATGAGGGTGAATTGGCTGAGCATGTTTCTTCTCTGCCAGATAATGACAGCAGAAACTGGATTCAATTGTCAATGGCAGGCACTGAGGGGGCAGAAAGTACAGTTTCTGGAACTGTTGATTCTTCACATGTTCGTACTAACTTAATTCCTGGTTATGAACCTGCACAGATGAGTGGATCAAGTTCAATGCTTCCCATTACTCCAATGCTTGTGGGTTCCGATTCAAGACAGAGAGGAGCTGATAACCATGGAATGGTACCTATGGGAAATTCCAGTTCATCAACAAGCCATTTAGATGGGGATGAGGAGTTTAGTAACTCTAATGCAAGCCAGTCTGATCAGAACTTGGATTCACCTGAGAACCTTGATCAGTCAGAGATCTTCAATAATTTGAATTCTATGAAAGGGCCTGCTTCTATGGAGCCTTCTGAAGAGCACGAGTCAGACATTCTGGACAGTGATTTTCCTCGTCATTTGCAGAATCTGCGAGAGGGGCAGCTTTGCCTGAATACCAGAAATCATGAGCCTTGGCTTTATCCTTCTGTTATGCCACCCATGTATTTTCAGGGTCCATGGGACAGTCCTGGAAGACCTCTATCTACAAACATGAACCTCTTTGCACAGCTTATGGGTTATGGTCCTCGCCTCATTCCTGTTTCACCTCTCCAGCCTGGGTCTAATAGGCCTACTGGTGTTTATCAACATTATGGTGATGAAGTTCCTAGATATCGTGGTGGGACTGGGACTTACTTGCCAAATCCTAAGATTTCTTTTAGGGACCGGCAATCTTCAAATACCAGAAACCACAGGGGGCATTATGGTTACGATAGGAAGGATCACCATGGTGACAGGGACGGAAACTGGAACATCAACTCTAAGCCACGATTTTCTGGTCGTGCTCAAGGTCGGAACCAAGTTGATAAGCCAAACTCAAGGATTGATCGGTCAACCTCAAGTAACAGCCAATCTGATAGATCATGGGATACATTCAAGCATGAACCTTTCCCCTCATATCACTCCCAAAACGGTCCTCTTAGCTCCTCAAACTCCACTAACCGTGGTTCTGCCAATATGGCATATGGCATGTATCCAATGCCAGTCATGAATCCAAATGGTGTTTCTCCATCTGGAACTGGTGTGCCCCCTGTAGTTATGCTGTATCCATATGACCAGAACATGGGCTATGCGTCTCCAACTGATCAGCTTGAGTTTGGGTCTCTTGGGCCTGTTCATTTCTCAGGTATAAATGAAGTGTCTCAACTCAGTGAAGTTTCATCAAGGGGGGTCAATGATTTGCAAAATTTCCAAGGAGATTCTGCACTTTCTTCACCAGATCAGCCCTCTTCGCCCAAGATTCAAAGCAGAACCTTGACCCAGAGGAATCAACAGTTGAAGGAAGAACTGCCACAACCTTCTCTTCCCGAACCAAGGAGATATTGTGGGAGGCAGCAACTACAATGA 4080 44.07 MGGHEGWAQPNGFSPNGLLPNEAASVTRALDQERLSLAEERTKQLIACIQPNQPSEERREAVASYVKSLIMKCFSCKVFPFGSVPLKTYLPDGDIDLTAFSKSPNLKDTWANEVRDILEREEKSGDAEFRVKEVQYIQAEVKIIKCLVENIVVDISFNQLGGLCTLCFLEEVDHLISQKHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFRVFNNSFAGPLEVLYRFLEFFSKFDWENYCVSLWGPVPISSLPDVTADPPRKDSGELLLSKLFLDACSSVYAVLPVGQENPEQPFISKYFNVIDPLRTNNNLGRSVSKGNFFRIRSAFAFGAQRLARLLDCPKDNVIAEVNQFFMNTWERHGKGDRPDAPSPDLYGLQQASSNHIEGSDGFRSNPNRKKMKENSISHESEVEVTRGSHASHSVSSQHGNYSSKQISRTAAVYAASHTQNQKAYANLTSSITADQNHQTAQSTSSNENIHTDKGRSSRPDYLGNEVHARYQFARTHSSPELTDASSDVPSRGRRNRTSETGKGQTVPARSDYSRRRNLGSEVPDYHSARSSTENSPSSRHGSSHRSIDAAVNSNSASNSYHGESGLSTVGEDHPSVAETMQMHQEEQDRVNMMASRVHGFSGQIQMPVNLASAHLPVPISPSILASLGHAHRNVAGMIPTNMASFGPPWGSNIHYSQGLTSLPVSQYFPSVGMTSNKEMVEPLDDNLGSTEINQENNDHGFWSERDSDSMRDFDPDNGNSVGFNIGTSSRPSSSDNYLMKAQGVTKGNRGLIRENYGDNSQYQNIKGTDVYSAASSRSIPASQAPPARSKLSSEGSWDESPSKVSRSARDRRGRRTAPSAEPSTTYRSGKNGRQYEGELAEHVSSLPDNDSRNWIQLSMAGTEGAESTVSGTVDSSHVRTNLIPGYEPAQMSGSSSMLPITPMLVGSDSRQRGADNHGMVPMGNSSSSTSHLDGDEEFSNSNASQSDQNLDSPENLDQSEIFNNLNSMKGPASMEPSEEHESDILDSDFPRHLQNLREGQLCLNTRNHEPWLYPSVMPPMYFQGPWDSPGRPLSTNMNLFAQLMGYGPRLIPVSPLQPGSNRPTGVYQHYGDEVPRYRGGTGTYLPNPKISFRDRQSSNTRNHRGHYGYDRKDHHGDRDGNWNINSKPRFSGRAQGRNQVDKPNSRIDRSTSSNSQSDRSWDTFKHEPFPSYHSQNGPLSSSNSTNRGSANMAYGMYPMPVMNPNGVSPSGTGVPPVVMLYPYDQNMGYASPTDQLEFGSLGPVHFSGINEVSQLSEVSSRGVNDLQNFQGDSALSSPDQPSSPKIQSRTLTQRNQQLKEELPQPSLPEPRRYCGRQQLQ* 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19588380 19600987 - Vvi16g877 Vvi16g877 778526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g877 1359 MobiDBLite consensus disorder prediction 815 872 - -
Vvi16g877 1359 PANTHER - 1 1328 - -
Vvi16g877 1359 SUPERFAMILY Nucleotidyltransferase 20 200 IPR043519 -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 737 752 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 942 995 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 959 995 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 473 489 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 1003 1022 - -
Vvi16g877 1359 SUPERFAMILY PAP/OAS1 substrate-binding domain 181 352 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 1163 1198 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 1304 1341 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 426 442 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 815 841 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 729 775 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 759 775 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 1208 1226 - -
Vvi16g877 1359 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 1 1328 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 473 585 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 1304 1359 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 401 425 - -
Vvi16g877 1359 CDD NT_PAP_TUTase 58 165 - -
Vvi16g877 1359 Gene3D Beta Polymerase, domain 2 51 160 IPR043519 -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 563 585 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 1135 1161 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 842 856 - -
Vvi16g877 1359 Gene3D - 161 355 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 1116 1226 - -
Vvi16g877 1359 MobiDBLite consensus disorder prediction 393 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g877 - - - vvi:100248390 2641.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g877 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004666 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 2 42