Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g881 ATGGCGCTGGGTGCAATTTCAACCTGTGGTGGTGCTAAAGGAAGCACACTTCCTAATCATGCCATTCGAACAGCTAATCTCTCACATTCTAGCTCTTTCATGCCAAGTGGGAATGTTGGAGCTCTTCAGTTTAGACTAAAAGTAAAAAAATCAGTTTTTAGGTATCAAATCTTTCCACTATTCATGAAAGAGAAGGGGAGCCTAACCCCAAGGACTTTAGTTTTTGCTGCGCAAAAAGAAAGTGATGAATCTGAGAGTGGCAGCTCGCAGTCTTGCATTGAAGATCAAATGCATATGGCCCCGGAATATAATGATGGTTCTAGGGATCCAGATGTGGAAGTTGCTTCCATCACGCTCTCAGAGGCAGATCTCTCTCAAAGTGCTGTGCAGCTGGGAAACCAAGGGAACCTTCTTGACAAACTAAAGGCTGTTCACTTGCATATATTGGCAATGGAACAATGGAATGCTTCCCGAATTAAATTATGCCACAGAAATTACATGGCGAGTGCTACAAACTTAATCCATTACCTGGCATTGAAATGCCTTGATGTTGAGCAGCTCAAAGAAGATCTTTCATCTGTAGGTCTTCTGAATTTGGAAACCATCAATCCATGTGTCATTGCAAATCTCACTGCTGGCATCCAGATGTTGGAAAACCTGAAATCTTACCCTCTGAACATCAAAGAGAATGCTTGGGAATTTATCATAGATACAATGAGGAAGAAAGCATCCTCCAATATGAAGATATTATTGGGCCCACTTGCAGATGAAAGAACTGCTCATATCATGGTAACAGTTGGGCAAGAAGTGACTGAGAATGAAACACTTATAACTGATATACTCAAGAGTGGGGCCACCATTATTAGGATTAATTGCGCACATGGAAACCCGAGCATCTGGAGTGAAATAATCAGAAGGGTGAGAAGAAGCTCTCAGATGCTGGAGAAGCCATGTCGAATTCTCATGGACTTAGCTGGACCAAAGCTACGGACAGGCAACATGAAGGCTGGTCCATGTTTTGTCAGATTAAGAGTTGGAGACTTGCTGATCATATCACTAGATAGCTCAATCGAACAGGATGAGCTGACTCAACCTACAGTTGATGCTTATAGGGTAACTTGTCCATCTAGTTTTCTTTTTGATTCAGTCAAACCAGGCGAACCCATTGCTTTTGATGATGGGAAGATTTGGGGTGTAATCCAAGGAACAAGTGCTTCAGAGATTATTGTATCAATCACTCATGCAAGTCCAAGAGGCACTAAACTTGGTGCAGAGAAATCAATCAACATCCCGGAGAGCAATATCAGGTTTGAAGGCCTCACTACAAAGGATCTCATGGATCTTGAATTTGTTGCTGCTCATGCTGACATGGTGGGAATTTCATTCATCCGAGACGTTCGTGACATTGTTGTGCTTCGTGCAGAGCTGGAGAAGAGGAAGCTTCACAACCTAGGAATTGTGTTAAAGATTGAAACAAGCAGTGGGTTTGATAAACTGCCTCTCTTACTGTTGGAGGCAATGAAATCACCAAATCCCTTGGGAGTTATGATCGCCAGAGGAGATCTTGCAGTGGAGTGCGGTTGGGAAAGGTTGGGGGATATACAGGAAGAAATTCTATCGATTTGTAGTGCTGCCCATGTACCAGTCATTTGGGCTACTCAGGTTCTTGAGTCGCTTGTCAAGTCTGGCGTGCCTACTAGAGCTGAACTTACAGATGTGGCCAATGGAAGAAGGGCAAGTTGCATCATGTTAAACAAAGGCAAGCACATTGTGGATGCAGTTTCTACTTTGGATATCATCCTGCAAGGCAAGTCCACAAAGATGAAAGCAGAGCTCAAGCCTCTTGTACTTTCTAGCCACCTGTTTTAA 1869 43.23 MALGAISTCGGAKGSTLPNHAIRTANLSHSSSFMPSGNVGALQFRLKVKKSVFRYQIFPLFMKEKGSLTPRTLVFAAQKESDESESGSSQSCIEDQMHMAPEYNDGSRDPDVEVASITLSEADLSQSAVQLGNQGNLLDKLKAVHLHILAMEQWNASRIKLCHRNYMASATNLIHYLALKCLDVEQLKEDLSSVGLLNLETINPCVIANLTAGIQMLENLKSYPLNIKENAWEFIIDTMRKKASSNMKILLGPLADERTAHIMVTVGQEVTENETLITDILKSGATIIRINCAHGNPSIWSEIIRRVRRSSQMLEKPCRILMDLAGPKLRTGNMKAGPCFVRLRVGDLLIISLDSSIEQDELTQPTVDAYRVTCPSSFLFDSVKPGEPIAFDDGKIWGVIQGTSASEIIVSITHASPRGTKLGAEKSINIPESNIRFEGLTTKDLMDLEFVAAHADMVGISFIRDVRDIVVLRAELEKRKLHNLGIVLKIETSSGFDKLPLLLLEAMKSPNPLGVMIARGDLAVECGWERLGDIQEEILSICSAAHVPVIWATQVLESLVKSGVPTRAELTDVANGRRASCIMLNKGKHIVDAVSTLDIILQGKSTKMKAELKPLVLSSHLF* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19670038 19676461 - Vvi16g881 Vvi16g881 778530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g881 622 Gene3D - 328 437 IPR015806 GO:0004743|GO:0006096
Vvi16g881 622 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 255 601 IPR015813 GO:0003824
Vvi16g881 622 PANTHER PYRUVATE KINASE 339 620 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g881 622 PANTHER PYRUVATE KINASE 101 338 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g881 622 SUPERFAMILY PK beta-barrel domain-like 327 435 IPR011037 -
Vvi16g881 622 Gene3D - 261 600 IPR040442 -
Vvi16g881 622 PRINTS Pyruvate kinase family signature 316 332 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g881 622 PRINTS Pyruvate kinase family signature 455 469 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g881 622 PRINTS Pyruvate kinase family signature 519 543 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g881 622 PRINTS Pyruvate kinase family signature 544 568 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g881 622 Pfam Pyruvate kinase, barrel domain 258 600 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g881 622 PANTHER PLASTIDIAL PYRUVATE KINASE 4, CHLOROPLASTIC 101 338 - -
Vvi16g881 622 PANTHER PLASTIDIAL PYRUVATE KINASE 4, CHLOROPLASTIC 339 620 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g881 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - vvi:100246758 647.506
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g881 . . . . . . . . . . Cma02g01161 . . . . Cpe05g00567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070948 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1