Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g883 ATGAAGCCGAAATGCCAATCTGAGACCGACGTCGGGGTCGGGACCGGCGTCGATGAGAAGGAAGAGAAATCCAATGTGGAAGACTGCTCGACAGAGATATCGCTGTCGTTCTCCTCGTCGTCCCCGTCGTCCTCGGAGAACGACGCAATTCCGGCTAAGAAGACGGAAGTTGCACGAAGTTTTCAGCCTCCGTCGTACGGGACGGTGTCGGTGATTGGGAGGAGGAGGGAAATGGAGGATGCGGTGAGGAGAAGGAGAATTGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGCCAACTGCGGCGACTCCAGAGCTGTGATATGCAGAGATGGTGTCGCCGTGCCTTTGTCAAACGATCATAAGCCAAACAGACCAGATGAACTGGATAGGGTAGAAGCTGCGGGAGGAAGAGTCATAAATTGGGACGGATACCGAGTCTTGGGAGTACTTGCCACTTCGAGATCTATAGGCGACCAGCACCTCAAGCCATTTGTGATATCAGAACCGGAAGTCACAGTGAGTGAGCGAACCGACGCCGACGAGTTCCTAATTCTAGCAAGCGATGGCCTGTGGGACGTGATATCGAATGAGGTTGCATGTCAAGTTGTGAGGAGATGTCTGGACGGCCAAGCGGGGCGAATTCGGAAGATTGAAAATGGAAGATCATCACATGCAATTGAAGCAAAAAGTCGAGTTGCAGAGGCAGCAACTCTGCTGGTAGAGATGGCAATGGGACGAGGTAGTAGAGATAACATAAGTGCCATAGTAGTTGAGCTGAAGAAACCCAAAACTGGAAATTTCTGTGAATAG 888 45.83 MKPKCQSETDVGVGTGVDEKEEKSNVEDCSTEISLSFSSSSPSSSENDAIPAKKTEVARSFQPPSYGTVSVIGRRREMEDAVRRRRIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVANCGDSRAVICRDGVAVPLSNDHKPNRPDELDRVEAAGGRVINWDGYRVLGVLATSRSIGDQHLKPFVISEPEVTVSERTDADEFLILASDGLWDVISNEVACQVVRRCLDGQAGRIRKIENGRSSHAIEAKSRVAEAATLLVEMAMGRGSRDNISAIVVELKKPKTGNFCE* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19697453 19699843 - Vvi16g883 Vvi16g883 778532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g883 295 PANTHER ALPHABET, ISOFORM E-RELATED 38 82 - -
Vvi16g883 295 PANTHER PROTEIN PHOSPHATASE 2C 8-RELATED 38 82 - -
Vvi16g883 295 SUPERFAMILY PP2C-like 122 287 IPR036457 -
Vvi16g883 295 CDD PP2Cc 123 285 IPR001932 -
Vvi16g883 295 ProSiteProfiles PPM-type phosphatase domain profile. 1 285 IPR001932 -
Vvi16g883 295 PANTHER ALPHABET, ISOFORM E-RELATED 122 291 - -
Vvi16g883 295 PANTHER PROTEIN PHOSPHATASE 2C 8-RELATED 122 291 - -
Vvi16g883 295 Coils Coil 294 295 - -
Vvi16g883 295 MobiDBLite consensus disorder prediction 1 59 - -
Vvi16g883 295 Coils Coil 87 88 - -
Vvi16g883 295 MobiDBLite consensus disorder prediction 29 50 - -
Vvi16g883 295 MobiDBLite consensus disorder prediction 14 28 - -
Vvi16g883 295 Pfam Protein phosphatase 2C 122 278 IPR001932 -
Vvi16g883 295 Gene3D - 118 291 IPR036457 -
Vvi16g883 295 SMART PP2C_4 2 283 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g129 Vvi16g883 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g883 K14497 - vvi:100267287 459.529