Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g883 | ATGAAGCCGAAATGCCAATCTGAGACCGACGTCGGGGTCGGGACCGGCGTCGATGAGAAGGAAGAGAAATCCAATGTGGAAGACTGCTCGACAGAGATATCGCTGTCGTTCTCCTCGTCGTCCCCGTCGTCCTCGGAGAACGACGCAATTCCGGCTAAGAAGACGGAAGTTGCACGAAGTTTTCAGCCTCCGTCGTACGGGACGGTGTCGGTGATTGGGAGGAGGAGGGAAATGGAGGATGCGGTGAGGAGAAGGAGAATTGCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGCCAACTGCGGCGACTCCAGAGCTGTGATATGCAGAGATGGTGTCGCCGTGCCTTTGTCAAACGATCATAAGCCAAACAGACCAGATGAACTGGATAGGGTAGAAGCTGCGGGAGGAAGAGTCATAAATTGGGACGGATACCGAGTCTTGGGAGTACTTGCCACTTCGAGATCTATAGGCGACCAGCACCTCAAGCCATTTGTGATATCAGAACCGGAAGTCACAGTGAGTGAGCGAACCGACGCCGACGAGTTCCTAATTCTAGCAAGCGATGGCCTGTGGGACGTGATATCGAATGAGGTTGCATGTCAAGTTGTGAGGAGATGTCTGGACGGCCAAGCGGGGCGAATTCGGAAGATTGAAAATGGAAGATCATCACATGCAATTGAAGCAAAAAGTCGAGTTGCAGAGGCAGCAACTCTGCTGGTAGAGATGGCAATGGGACGAGGTAGTAGAGATAACATAAGTGCCATAGTAGTTGAGCTGAAGAAACCCAAAACTGGAAATTTCTGTGAATAG | 888 | 45.83 | MKPKCQSETDVGVGTGVDEKEEKSNVEDCSTEISLSFSSSSPSSSENDAIPAKKTEVARSFQPPSYGTVSVIGRRREMEDAVRRRRIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVANCGDSRAVICRDGVAVPLSNDHKPNRPDELDRVEAAGGRVINWDGYRVLGVLATSRSIGDQHLKPFVISEPEVTVSERTDADEFLILASDGLWDVISNEVACQVVRRCLDGQAGRIRKIENGRSSHAIEAKSRVAEAATLLVEMAMGRGSRDNISAIVVELKKPKTGNFCE* | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 19697453 | 19699843 | - | Vvi16g883 | Vvi16g883 | 778532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g883 | 295 | PANTHER | ALPHABET, ISOFORM E-RELATED | 38 | 82 | - | - | |
Vvi16g883 | 295 | PANTHER | PROTEIN PHOSPHATASE 2C 8-RELATED | 38 | 82 | - | - | |
Vvi16g883 | 295 | SUPERFAMILY | PP2C-like | 122 | 287 | IPR036457 | - | |
Vvi16g883 | 295 | CDD | PP2Cc | 123 | 285 | IPR001932 | - | |
Vvi16g883 | 295 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 285 | IPR001932 | - | |
Vvi16g883 | 295 | PANTHER | ALPHABET, ISOFORM E-RELATED | 122 | 291 | - | - | |
Vvi16g883 | 295 | PANTHER | PROTEIN PHOSPHATASE 2C 8-RELATED | 122 | 291 | - | - | |
Vvi16g883 | 295 | Coils | Coil | 294 | 295 | - | - | |
Vvi16g883 | 295 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Vvi16g883 | 295 | Coils | Coil | 87 | 88 | - | - | |
Vvi16g883 | 295 | MobiDBLite | consensus disorder prediction | 29 | 50 | - | - | |
Vvi16g883 | 295 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - | |
Vvi16g883 | 295 | Pfam | Protein phosphatase 2C | 122 | 278 | IPR001932 | - | |
Vvi16g883 | 295 | Gene3D | - | 118 | 291 | IPR036457 | - | |
Vvi16g883 | 295 | SMART | PP2C_4 | 2 | 283 | IPR001932 | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g883 | K14497 | - | vvi:100267287 | 459.529 |