Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g898 ATGTTCAATGGAAGTGCATTTTCTTTGAAGTGGTCGAAATCAATATGTGGAAGCTGCCCAGGAGGAGGAAAAATATGCAGACTGAAGAAGAGTAATGGCGCGCAACCAGAAACTGAATGTATTAAAGGTGTATTGAAGAAAATAATTGTGACAGGTGCAATCTTTGGTTTCTTTCTTCTCATGTTAGTAATTGTTGCGCTTTATCGAGTCTATAGGTCAAATAAATTAGAAAGAGAGTATAGAATAAATGTTAAAAAGTTTTTGCAAGACTACGAAGCTCTCAAGCCCTCAAGATACTCCTATTCTGATATTAAAAGGATTACAAATCAATTCAAAGATAAATTAGGCCAAGGAGGTTATGGAATCGTGTACAAAGGAAAGCTTTCACATGAAGTTTTTGTTGCAGTAAAAATCCTTAACAATTCTCAGGGAAATGGGGAAGAGTTCATTAATGAAGTGGCAACAATGGGTACAATCCACCATGTCAATGTAGTTCGCTTAGTTGGATTTTGTGCTGATGGGTTTAAGCGAGCTCTAATTTATGAGTACTTACCAAATGAGTCATTAGAGAAGTTCATATTTTCAAGAGCTGTTAAGAACTATTCACTTAGTTGGAAGAAACTTCAAGAAATTGCTATAGGTATAGCGAAAGGAATTGAGTATCTTCATCAAGGTTGTGATCAAAGAATCCTCCACTTTGATATCAAACCTCATAATATTTTACTTGATCACAACTTTAATCCAAAGATTTCTGACTTTGGTTTAGCCAAATTGTGCTCCAAGGAACAAAGTGCAGTCTCTATGACAATTGCAAGGGGAACAATAGGCTACATTGCTCCAAAAGTGTTGTCTAGGAATTTTGGGAATGTGTCTTATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTTGGAGGGAGGAAGAACATTGATGTTAGTGTGGAGAGCACTAGCCAAGTATACTTTCCAGAATGGATTTATAATCATTTGGATCATGGGGAAGAGTTGCTTATTCGGATTGAAGAAGAAATAGATGCTAAGATTGCAAAGAAATTAGCAATTGTGGGACTTTCATGCATTCAATGGTATCCAGTGGATCGTCCTTCCATGAAAATTGTGGTTCAAATGTTGGAAGGAGAAGGAGACAAATTAACCATGCCTCCTAATCCTTTTGCTTCAACAGTTCCAACAAAGACAAATTTGAGCAAGCCACGAAGAGCTTTTCAACAAGAGTTGGCAATCATTTTAGAACTAGAGCAAAAATAG 1275 36.31 MFNGSAFSLKWSKSICGSCPGGGKICRLKKSNGAQPETECIKGVLKKIIVTGAIFGFFLLMLVIVALYRVYRSNKLEREYRINVKKFLQDYEALKPSRYSYSDIKRITNQFKDKLGQGGYGIVYKGKLSHEVFVAVKILNNSQGNGEEFINEVATMGTIHHVNVVRLVGFCADGFKRALIYEYLPNESLEKFIFSRAVKNYSLSWKKLQEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTIARGTIGYIAPKVLSRNFGNVSYKSDVYSFGMLLLEMVGGRKNIDVSVESTSQVYFPEWIYNHLDHGEELLIRIEEEIDAKIAKKLAIVGLSCIQWYPVDRPSMKIVVQMLEGEGDKLTMPPNPFASTVPTKTNLSKPRRAFQQELAIILELEQK* 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20587737 20590722 + Vvi16g898 Vvi16g898 778547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g898 424 SMART serkin_6 109 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g898 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vvi16g898 424 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 421 IPR045874 GO:0004672
Vvi16g898 424 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Vvi16g898 424 Gene3D Transferase(Phosphotransferase) domain 1 184 388 - -
Vvi16g898 424 Gene3D Phosphorylase Kinase; domain 1 75 183 - -
Vvi16g898 424 PANTHER RECEPTOR-LIKE KINASE 5 421 - -
Vvi16g898 424 ProSiteProfiles Protein kinase domain profile. 109 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g898 424 SUPERFAMILY Protein kinase-like (PK-like) 92 381 IPR011009 -
Vvi16g898 424 Pfam Protein kinase domain 111 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76287 PF00069 Pkinase 6.50E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g898 - - vvi:100253822 846.654