Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g899 ATGGTCCAATATCCGTATAATTGCTTTGTAGGACAGCTTCAGAACCTCAGTTTAGCGGCTTCCCCTTTCCAGTTCAAACTAGAAAATGCCTGGGAAGTCCTAGATGACTTCACCTTCTTCAATTGTTCATCAAACAAAAGAGAATTCTATTTTGTTCAGTCCATCCCTTGCCTCTCTATTCCTGGTTACCCAGTTTATGCTATTATGTCCTCTGCTGATCTTGATGAAGTTAACCTATCCTCCTGCCGTAGGATGTACAATCTCACACTTCCGTATAGTATATCTGATCTGAATGGCAAATTCTCTATAAAGTGGTCAAAATCGGTATGTGGAAACTGTGAAGCACAAGGCAAGAAATGCAGACTGAAGAGAAACAGCAAGGAACCTGAAACCGAATGCATCAATAATCCATCAAAAGGTAGTGCAACAACAAAGTTGGTGGTTGCAGGTGCAGTCACTGGTTTCCTTCTTCTTGTCCTAGCTGTCAGTGTACTCTACTATCTGCACTGCTCACGAAAACTAGAAGAAAAGAATAAAAGAAAGATTGAAAAATTTCTGGAAGATTACAGAGCTCTAAAGCCCTCAAGGTATTCATATGCCGATATTAAGAAGATTACAGATCAGTTTAAGTACATACTGGGCCAAGGAGGTTATGGAACTGTGTACAAAGGGAAACTTTCTAATGAAGTACTTGTTGCGGTGAAGATCCTTAACAATTTCAGGGGAAATGGGGAAGAGTTCATTAATGAGATGGCAACAATGGGTAGAATCCACCATGTTAATGTGGTTCGCTTGGTCGGCTTTTGTGCTGATGGAATGAGACGAGCTCTCATCTTTGAGTTCTTACCAAATGATTCTCTTAACAAGTTCATATTTTCAGCTAAACATTCACTTGTTTGGGAGAAACTTCAAGATATTGCTATAGGCATAGCCAAAGGAATGGAGTATCTTCACCAAGGTTGTGAACAAAGAATCCTTCATTTTGACATCAAACCTCATAATATTTTGCTAGATCACAACTTTAATCCAAAGATTTCTGATTTTGGTCTAGCCAAATTATGTTCCAAGGACCAAAGTGCTGTTTCTATGACTATAGCTAGGGGGACTATGGGCTATATTGCTCCTGAAGTGTTATCCAGGAATTTTGGGAATGTGTCCTATAAGTCAGATGTTTATAGTTTTGGGATGTTGTTGCTTGAAATGGTTTCGGGGAGGAAAAACAGTGATGTCACAGCTGAGAACCCTAGCCAAGTATACTTCCCAGAATGGATTTATAACCATTTGAATCAAGGCGAAGAGCTGCACATCAGAATTATGGAAAACAGAGATGCCACAATAGCAAAGAAACTAGCAATTGTGGGACTCTGGTGCATTCAATGGTATCCAGTTGATCGTCCATCCATGAAACTTGTGGTTCAGATGTTAGAAGGAGAAGACAATTTAACCATGCCTCCAAATCCTTTTGCGTCTACAAGTCCAACAAATACAAAAACAAGTCAGTCAAGAACACCTCTTCAGAAAGAGCTTGCAGTCATCTCAGAATGA 1545 39.81 MVQYPYNCFVGQLQNLSLAASPFQFKLENAWEVLDDFTFFNCSSNKREFYFVQSIPCLSIPGYPVYAIMSSADLDEVNLSSCRRMYNLTLPYSISDLNGKFSIKWSKSVCGNCEAQGKKCRLKRNSKEPETECINNPSKGSATTKLVVAGAVTGFLLLVLAVSVLYYLHCSRKLEEKNKRKIEKFLEDYRALKPSRYSYADIKKITDQFKYILGQGGYGTVYKGKLSNEVLVAVKILNNFRGNGEEFINEMATMGRIHHVNVVRLVGFCADGMRRALIFEFLPNDSLNKFIFSAKHSLVWEKLQDIAIGIAKGMEYLHQGCEQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKDQSAVSMTIARGTMGYIAPEVLSRNFGNVSYKSDVYSFGMLLLEMVSGRKNSDVTAENPSQVYFPEWIYNHLNQGEELHIRIMENRDATIAKKLAIVGLWCIQWYPVDRPSMKLVVQMLEGEDNLTMPPNPFASTSPTNTKTSQSRTPLQKELAVISE* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20615305 20618269 - Vvi16g899 Vvi16g899 778548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g899 514 PANTHER RECEPTOR-LIKE KINASE 1 514 - -
Vvi16g899 514 Gene3D Transferase(Phosphotransferase) domain 1 282 483 - -
Vvi16g899 514 SUPERFAMILY Protein kinase-like (PK-like) 189 476 IPR011009 -
Vvi16g899 514 MobiDBLite consensus disorder prediction 484 508 - -
Vvi16g899 514 Gene3D Phosphorylase Kinase; domain 1 179 281 - -
Vvi16g899 514 Pfam Protein kinase domain 211 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g899 514 SMART serkin_6 207 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g899 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Vvi16g899 514 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 514 IPR045874 GO:0004672
Vvi16g899 514 ProSitePatterns Protein kinases ATP-binding region signature. 213 235 IPR017441 GO:0005524
Vvi16g899 514 ProSiteProfiles Protein kinase domain profile. 207 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g899 514 MobiDBLite consensus disorder prediction 482 514 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76288 PF00069 Pkinase 1.60E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g899 - - vvi:100260698 1038.1