Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g900 ATGAATTGTACAAGTTCAATCAGTGATCATAGCTACATTCGAATTAATCCCTGCAACTCCAGCAGCACTTCATTTTCATCACAGGCATATGTTTATGCGCTAGCAGGAGTTTCTGAGGTGGGAGACATCAAGTATTCATGCACAATAGGCATGACTATTTCTACTCGACCATTGAAGGAAGTTTCTTCAAAGCCCAGGAATCAATCAATGTCAGAATTGCAAGAAGAGCTTCTTGTGGGACTTGAGATTTCATTTCTGCCTTATCGCTGCAGCAGCGAATGCCATATGGAAGGGCAATCCTGCTATATGAATTTTATTGAAAATACAATTACATGTGTCTCCAACAGGGGATGCGGGGACTGGAGCAGTTGCTTAAAGCCAACTTGGCTAAGGAAATTCCTCTTTGACTTCCTGTTTCCTTTAATCGATGCCATATTTTCGGTTGAGCCCTCTCAAATCTTCAGTGTTAGAGATTTGCTCAACGATTTGCCGTTCAGTTTACTTGGCTGGATTATCCGAGTGATCCTTATAATTGTGGCTGGAAGAGCTGTGATTGGGATGCTATGCCTATGTGCCTTTCTGATTTACAAGTTTCAAAGGAGACACTTATCAATGGATGATACTCTTGAGGAATTCCTACAAAGTCATAACAATCTCCAGCCAATCAGGTACTCATATTCAGAAATAAAGAAGATGACTAATAATTTTCAAGATAAATTAGGTCAAGGAGGCTTTGGCTCGGTCTATAAAGGAAAGCTTCGAAGTGGCCAGATTGTAGCAGTAAAAATGTTGGTTGTGTCAAAATCTAATGGGCAGGACTTCATCAATGAAGTTGCTACAATTGGAAGGATTCATCATGTGAATGTGGTGCGACTCGTAGGGTTTTGCACGGAAAAATCAAAATATGCTCTTGTATATGACTTCATGGCAAATGGATCCCTTGATAAGTATGTTTTTCTCGAACGAGAAAATTCCATTCCTTTGAGCTGGGAGAGGTTGTATAACATTGCACTTGGAGTGGCTCATGGGATTGAATATTTACATCGTGGCTGTGAAATGCAAATTCTGCATTTTGATATCAAGCCACACAACATTCTTCTCGATGAAAACTTCACCCCAAAAGTTTCAGATTTTGGCCTTGCAAAACTGTATTCATCGGATCAAAATGCTGTCACTCTCACTGCAGCACGAGGAACGCTTGGATACATTGCTCCGGAACTGTTCTACAAAAACATTGGAGATGTCTCATATAAGGCCGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGATGGGGAAAAGGAAGTACATGAATGCCCGTGCTGAGAAAAGCGAAATATTCTTTCCATCATGGATTTATGACCGGATTGATCGAGGAGAAGACATGGAAATGGGAGAAGCCACTGAGGAAGAAAAGAAGTATATAAGGAAAATCATCATAGTTGCATTATGGTGTGTTCAAATGAAGCCCACTAACCGTCCTTCAATGAGCAAAGCACTGGAGATGCTGGAAAGTGAGGTAGAACTCTTGCAGATGCCTTCCAAGCCTACACTACATTCCAAGGATTTGTCAATGGAGGATGGTATGAACAATCCAATTGGGGCACCAGTTTCTTCATGCAATGGCACAATGACAATTAGCTTAGAAGGAAGGTAG 1659 40.81 MNCTSSISDHSYIRINPCNSSSTSFSSQAYVYALAGVSEVGDIKYSCTIGMTISTRPLKEVSSKPRNQSMSELQEELLVGLEISFLPYRCSSECHMEGQSCYMNFIENTITCVSNRGCGDWSSCLKPTWLRKFLFDFLFPLIDAIFSVEPSQIFSVRDLLNDLPFSLLGWIIRVILIIVAGRAVIGMLCLCAFLIYKFQRRHLSMDDTLEEFLQSHNNLQPIRYSYSEIKKMTNNFQDKLGQGGFGSVYKGKLRSGQIVAVKMLVVSKSNGQDFINEVATIGRIHHVNVVRLVGFCTEKSKYALVYDFMANGSLDKYVFLERENSIPLSWERLYNIALGVAHGIEYLHRGCEMQILHFDIKPHNILLDENFTPKVSDFGLAKLYSSDQNAVTLTAARGTLGYIAPELFYKNIGDVSYKADVYSFGMLLMEMMGKRKYMNARAEKSEIFFPSWIYDRIDRGEDMEMGEATEEEKKYIRKIIIVALWCVQMKPTNRPSMSKALEMLESEVELLQMPSKPTLHSKDLSMEDGMNNPIGAPVSSCNGTMTISLEGR* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20619364 20622755 + Vvi16g900 Vvi16g900 778549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g900 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Vvi16g900 552 Gene3D Transferase(Phosphotransferase) domain 1 309 515 - -
Vvi16g900 552 Gene3D Phosphorylase Kinase; domain 1 207 308 - -
Vvi16g900 552 SUPERFAMILY Protein kinase-like (PK-like) 212 505 IPR011009 -
Vvi16g900 552 PANTHER RUST RESISTANCE KINASE LR10-RELATED 78 534 IPR045874 GO:0004672
Vvi16g900 552 ProSiteProfiles Protein kinase domain profile. 234 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g900 552 ProSitePatterns Protein kinases ATP-binding region signature. 240 262 IPR017441 GO:0005524
Vvi16g900 552 SMART serkin_6 234 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g900 552 Pfam Protein kinase domain 237 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g900 552 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 2.8 78 534 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76289 PF00069 Pkinase 6.70E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g900 - - vvi:104882255 1095.88