Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g902 ATGTCAGACTTGCAAGACGAGCTGCTCATGGGAGTTGAGCTTTCATTTTTGCATTACCGCTGCAGCAGAGAATGCAATGTGCAGGGGCGATCCTGCCATCTGAATTACATTCAGAGTACTCTACAATGCAAAATTGTGCCCACAGTATGTGACTACCCAATCGGTTGCATCAAGCCAATCTGGCTGAGGCATTTGTTGTACCTGCTTGCTCTAATTTGTACAGCCATTTTATCAAATCAATTTCAAATCTTTGCTATCGTCATTGGAGGAAGAACTGTGCTCGGGATATTGTGCCTGTCTGCCTATGTAATCTATAGGTTTCGACGGAGACACTTATCCTTGGATGATAGTATTGAAGATTTCTTACAAAATCATAGAAATCTCCAGCCAATCAGGTACTCATACTCAGAGATAAAGAAGATTACTAATGGTTTTAAGGACAAATTAGGGCAGGGAGGCTTTGGTTCAGTATATAAAGGAAAACTCCGAAGTGGTTGTATTGTAGCAGTGAAGATGTTGGTCATGTCAAAAACTAATGGCCAGGATTTCATTAATGAAGTTGCTACAATTGGAAGGATTCATCATGTTAATGTCGTGCGGCTCATTGGATTTTGTGTAGAGGGACCCAAATGGGCTCTTATATATGATTTCATGCCTAATGGATCTCTTGATAAGTATATTTTCCCTGAAAGAAAAAATTCTGTTCCTTTGAGTTGGGAGATATTGTACAAGATTGCCCTTGGAGTGGGGCGAGGAATTGAATATTTACATCAAGGTTGTGACATGCAGATACTACATTTTGATATCAAGCCACACAACATTCTTCTTGATAAAACCTTCGCACCAAAAGTTTCAGATTTTGGCCTGGCAAAACTGTATTCAGTGAATCAAAGTATCGTCTCCCTCACTGCAGCACGAGGAACACTGGGATATATAGCTCCAGAACTATTCTACAAAAACATTGGTGGTGTCTCATACAAGGCTGACGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGTGGGAAAAAAGAGGTATGTGAATGCACATAAAGACGACTCAAGTGAAATGTACTTCCCATCATGGATTTATGACCGAATCAACAAAGGAGAGGACATGGAAATGGGAGATGCAACTGAGGATGAAAAGAAATGTGTAAGGAAGATGGTGATTGTTGCGCTATGGTGTATACAGATGAAGCCTACAGACCGCCCTTCAATGAGCAAAGCACTGGAGATGTTGGAAGGTGACATCGAACTCTTGAAAATGCCTCCTAAGCCTACTCTATATTCCCAGAACAGGTCAATTGAGGATCATGGTAACAACCCAAATGGGATTCCAGCTTCCTCATGTAATGCCATGATCACAATTTCCTTGGATGGAAGGTAG 1389 40.89 MSDLQDELLMGVELSFLHYRCSRECNVQGRSCHLNYIQSTLQCKIVPTVCDYPIGCIKPIWLRHLLYLLALICTAILSNQFQIFAIVIGGRTVLGILCLSAYVIYRFRRRHLSLDDSIEDFLQNHRNLQPIRYSYSEIKKITNGFKDKLGQGGFGSVYKGKLRSGCIVAVKMLVMSKTNGQDFINEVATIGRIHHVNVVRLIGFCVEGPKWALIYDFMPNGSLDKYIFPERKNSVPLSWEILYKIALGVGRGIEYLHQGCDMQILHFDIKPHNILLDKTFAPKVSDFGLAKLYSVNQSIVSLTAARGTLGYIAPELFYKNIGGVSYKADVYSFGMLLMEMVGKKRYVNAHKDDSSEMYFPSWIYDRINKGEDMEMGDATEDEKKCVRKMVIVALWCIQMKPTDRPSMSKALEMLEGDIELLKMPPKPTLYSQNRSIEDHGNNPNGIPASSCNAMITISLDGR* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20638395 20641292 + Vvi16g902 Vvi16g902 778551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g902 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vvi16g902 462 CDD STKc_IRAK 149 416 - -
Vvi16g902 462 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 2.8 75 457 - -
Vvi16g902 462 PANTHER RUST RESISTANCE KINASE LR10-RELATED 75 457 IPR045874 GO:0004672
Vvi16g902 462 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Vvi16g902 462 Gene3D Transferase(Phosphotransferase) domain 1 218 422 - -
Vvi16g902 462 SMART serkin_6 143 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g902 462 Pfam Protein kinase domain 146 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g902 462 ProSiteProfiles Protein kinase domain profile. 143 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g902 462 Gene3D Phosphorylase Kinase; domain 1 117 217 - -
Vvi16g902 462 SUPERFAMILY Protein kinase-like (PK-like) 120 415 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76290 PF00069 Pkinase 5.00E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g902 - - vvi:104882253 945.266