Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g910 ATGGCTTTATGTGGGACTGGATTGAAATTGAGTTTGGAAAGCGTTGGAGTAGGGTATTATAGTAAAAATTCATCAACAAGACTGCTCAGATCTTCAGGTACTTCCTTGAACCAAAGGAAGCACAGTTCATTACAGCAGAAATGCTGGAGAGTAAGGTGTTCGTTGTCAAGAAAATCCACATTGCCAATGGAATCAGAAGATAATGTTCAAAGTGTTAGTTCAGTCTTGGTAGAGGAAGAATTGGAGCATGTTATTAAATTCAAGATCTCTGATTTTAAAATCAGTGATCGCGTTAGTGTTGGCCTTGGAGGACGGGCAGATGAGGTAGTTTTTGAAGCCACAGTGAAAGATTCACAAAGCCCTCTGAATGACACAAGGGTTGTGCTTAGGCAACTCATAAGTGCTCAAGCTAAGCGTAGAGGGAAACGTGCCATAGAGGTATTAAAGAGGCTAGTACGTCGTAGACTGATGTACCATTCATACTCCATGCAAGTTCATGGCTATGTCCCTTCACCAATGATTGGGGATGGTGGCTCATTTACCCTGGTTCACGGGTATCATGGTAGTTTTTCTTTAAGGCATTGGCTTCAACTTTCGGATTGGCTTCCAACCTTAGAAGCCACTCTTGCACTGGATGAGGAGTCTGTTAGGAGAGTGGGAGATGACACAGTTGGAGGACCTGCTGTGTCTCGACAACTGCGTCTTATACGAATTTTGATGAGGGATCTATTGATTGGAGTTAATTACTTGCACAGCCATGGACTTGCCCATACAGAGCTAAGGCTAGAGAATGTGCATATTTGTCCGGTGGATAGACATATTAAAGTAGGGATACTTGGAAATGCTGCTGATTTTTATGAGAGCAGTCAGAATAGTAGCACCCTGGACAGCAACATGGAGAGACGACAAATGATGATAGCATTTGACATGAGATGTGTTGGCTTCATGATGGCAAAAATGGTGTTGCGGGAACTGATGGATCCTACAATCTTTGCAAAGTTCAAATCATTCCTCACCAAGGGAAATGATCCTTCGTGCTTGCGGGAGTTTTTGTTGCAAATCCTCAATAGGAATTCCTCATCCGGAAATGCTGGGCTGCAGATACTAGATAGGAATTGGGGTGCAGGTTGGAATCTTCTATCTTCACTGCTTGCCACTAAATCTTCAAAGAGAATAAGTTGTTTAGACGCTTTAAGACACCCATTTCTGTGTGGACCAAGATGGCGAGTCAGCCCATCCATGGATATTATCAGATGGGGTCTTGGTTCTACAGCAGTTAGAATTTCGGAGGAATACATTTATCGCCTACCCCAGCGGACTAGGCTGGCGCATTTCATCGAATTAATGGAGATGCTGAATCCTTACTCAAAACCAAGGAATTGGCTGGAATTGCTGCCCGGAAAATGGCGGTTACTATACTCTACTGGGCGGCACATAGGTCTCACCCTCCGCCAGCCTTCCGCTCGAGTCCTCATCGGCGATGTCCACCTAACCGTCTCACGAACATCAACCCTCAACACCAACCTCTCGTTGACTTCAGACATCGGTTTCACAGTCATGGTAAACCAAAATTGGCCCCATGACAAGTCAGGGACGACTGGCAAACTGCAAGTGAATGCCATGTTCAGATTAACAGCCGGGAGACGACTGTATCTCAAGGAAGATAAAACCACAGGAAAGTTCCCTTCCCCCTCATCAACTTCCCAAAATTCTGTAATCCGAAAATTCTCAGGTAGGAAATGGAGGAAAGCAATCCCCTTTAAGGAGTTCCCGTCGACTCTCCCAGTGGCCAAATTCACCCCACATGACGTTGAGCTGACAATGAGTCTCGATGACCCATTGAGTACCAACGTCGACATTGCCAAAACCGTAGTCCGAGAAGTTAGGACACAAGTCCCACCCGAAATCTTTGATCTGTCGAAGATTGTTTGCGGAACGTATTTAGACCCCAGGCTGCTGGTCCTTCGTGGGGTGAGTGGATCAGCACTCCTCTTCACAAGGTCTTGTGAATGA 2013 45.45 MALCGTGLKLSLESVGVGYYSKNSSTRLLRSSGTSLNQRKHSSLQQKCWRVRCSLSRKSTLPMESEDNVQSVSSVLVEEELEHVIKFKISDFKISDRVSVGLGGRADEVVFEATVKDSQSPLNDTRVVLRQLISAQAKRRGKRAIEVLKRLVRRRLMYHSYSMQVHGYVPSPMIGDGGSFTLVHGYHGSFSLRHWLQLSDWLPTLEATLALDEESVRRVGDDTVGGPAVSRQLRLIRILMRDLLIGVNYLHSHGLAHTELRLENVHICPVDRHIKVGILGNAADFYESSQNSSTLDSNMERRQMMIAFDMRCVGFMMAKMVLRELMDPTIFAKFKSFLTKGNDPSCLREFLLQILNRNSSSGNAGLQILDRNWGAGWNLLSSLLATKSSKRISCLDALRHPFLCGPRWRVSPSMDIIRWGLGSTAVRISEEYIYRLPQRTRLAHFIELMEMLNPYSKPRNWLELLPGKWRLLYSTGRHIGLTLRQPSARVLIGDVHLTVSRTSTLNTNLSLTSDIGFTVMVNQNWPHDKSGTTGKLQVNAMFRLTAGRRLYLKEDKTTGKFPSPSSTSQNSVIRKFSGRKWRKAIPFKEFPSTLPVAKFTPHDVELTMSLDDPLSTNVDIAKTVVREVRTQVPPEIFDLSKIVCGTYLDPRLLVLRGVSGSALLFTRSCE* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20727487 20735214 - Vvi16g910 Vvi16g910 778559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g910 670 PANTHER CELL DIVISION PROTEIN KINASE 62 667 - -
Vvi16g910 670 SUPERFAMILY Protein kinase-like (PK-like) 109 418 IPR011009 -
Vvi16g910 670 Pfam PAP_fibrillin 438 664 IPR006843 -
Vvi16g910 670 PANTHER PLASTID-LIPID-ASSOCIATED PROTEIN 14, CHLOROPLASTIC-RELATED 62 667 - -
Vvi16g910 670 Gene3D Transferase(Phosphotransferase) domain 1 228 405 - -
Vvi16g910 670 SMART serkin_6 92 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g910 670 ProSiteProfiles Protein kinase domain profile. 92 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g910 - - - vvi:100248606 1290.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g910 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01226 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010965 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 2 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76291 PF04755 PAP_fibrillin 1.80E-07 No_clan Vvi PK