Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g911 ATGAATTTAGGAGAATTAATTGGAAAAGGGCAATTTGGTCATAAAAGAGGAATTTATCTCCAAGTCTTCGATATGCCGCGGAGTTCTCGGCACAAATCTCACAGAGAGAGCAAGCATAGTTCGAGAGATTACTCGGATTCGGAGAAGGAGAAAGATACGAGTTTGAAGGATCGGAAGGGGAGGGAGGATGGTGGCACTAGGGTTTTGAAGGATTCGGCATCCGGCGAGAAGCGGAAGCACGCCGCGAAGTCTCCGGAGAGCAAAGATTTAAACGGGCAATTTGTGGAGGAGTCCGGTGCGTCGAAGCGGCGGAAAGATAGGGTTAGCGACGGCGTAAATGATCGGTGGACTGGCGGCGAGGAGGAGTCTCAGAAGTCAAAGGATTCGAAGAGCAGGAGGAGGGATGAGAGCGGTGGGAAGGTGGAGTCGAAGCACAGAGATTCGAGTCGAAAGGAGGGGAGAGGAGCTGGACTGGAGAGGGAGAAGAAGGGAAAAGAAGGAAAAATTGAGACTTTAGGTGAAAATGTGGTGGAATTGGATGGTGTGGATAGCGAAAGGAGTAGGAAGCAGGGGTCTAAATCAGGCGGTTTGGAGGAAGAGCGTGTGGCCAGGAAAATGGCTGAAAATACTGAACAGAAAAATGATGCAAAAGAGTTGAATTTACAGGATGAGTTGCGAAATCCTGAACCAGATAATCAACTTGAGAGACGAATTAGGAAGAGGAGAGATGGCTCTGGTGATTGGGATAAGCATCAAGACAATATCAGAGACTTTAGTGATAGACAGTTATCCTCCAGGGATGATACTGCCATTGATGGAAGATACAAGGATGAGAAGTATACAGACAAATACCCAGAAGACTTGGACAGGGACAACAGGCATAGAGATGACAAGCAGAGAGATGAGCGCCTTGTAAGAGATCGTACTAGCAGGCTGGATGATAAGCACTTAAGAGATGACAAGGAGACTGTAGAAATTCAACAGAAGAAATCTGAGCCTCCCGACAGTGACCGTAATCGAGACCGAAATAGGGACCGGGATCATGAGAAGGAGCGAGAGCGTGACTATGATCGAGATTGGGACAGAGACCGGGACCGAGACCGAGACCATGATCGTGATCGAGACCGGGATCGGGAGCGGGAGCGAGATCGGGATCGGGAGAGAGATCGGGATCGGGAGCGAGATCGGGATCGGGAGCGAGATCGAGATAGAGACCGAGATCGTGAGCGAGATAGAGACCGGGATCGGGAGCGAGACCGTGATCGGGAGCGTGATAGAGACCGTGACCGGGATCGGGAACGAGATCGAGACCATCATAGGGACCGGGACCGGGACCGAGACCTAGACCAGGGACGAGAGCGAGACAGAAACCGAGATTGGGACCGTGACGGTCATCGTGACCGTGATCATAGTTCACATCTTGATGACCGAAGTAGCAAGTACAAAGATGACAGAGGAAAGAAAAAGTCTCCTGATGATTATGAGGAGCATAGTATTACTAAATCCAGAAGTGCTAAGGGTAACTATTCTGACATGGAAAAGAAATCATGGAGCAGTAGTAAAGTGGAGTCAGATGCTGATAGGGGAAGGTCTCATTCACGTCCAGCTCAAGTAGATACTACAGCCCGAAGGGCCTCCCCTGGCTCCAGTTCACAGGTCATGGATGAAAACAGGTATATAAAACAAGAAGATATCAAGTACAAAGATTTTGTGACAGACCATGCAACTCCAATGAGAGAGGTAACTGGTGCTTCTGGGGCACAAGACAGAGTTTCCAAGTACCGATCCATTGAGAAACCCTTTAAACTGGATGACAGCAATTTGGGTGCCTTATCAGTTGAAAGGTCTTTAAGTTCTAAGGCATCACCTGTGGGCTTGATGGATAGATCTCCATCAACAACGAGTAGATACATGAATAGAGCTGGAGTGAGGCGGAGTCTTGACATTGAAGAAACAGGACGTAGGAGCACAGGTTCTAATGATGCAAGAGAGAGTTCTGTTAATGAGGATAGATTAAGTCGGGATTTAACTTCTGACAAGCTTCTGGCAGATGAATCTTCGCAAGCAGATTCACCCGCATACAATAGAACCAGTCAGAGCAACCCATCTTTAATTCCTCCATTACTTGCTTTCAGGGGTGGAGTTGAGAGTCCTTTTCTGGAAGAGGGCAGTAGGATTAACTCAAGCACCCGTTACAAGAGGGGTGGTGAGCCCAATGTTGTAAGAGGGCACGGAAATGCTTGGAAGGGTGTCCCAAACTGGTCTTCACCAGTACCAAATGGTTTCATTCCTTTTCAACATGGGCCACCTCATGCAGGTTTCCAAGCATTGATGCCACAGTTTCCTTCACCTATTTTTGGTGTTAGACCTTCTATGGAAATAAATCATGCTGGGATTCCTTATCATATCCCTGATGCTGATAGGTTTCCTGCTCATTTACGCCCACTTGGGTGGCAGAATATGGTGGATGGTCCTGGTATCTCTCATTTGCCTGGATGGGATGGAAATAATGTTGTCTTTAGGGATGAACCTCAGATGTATGGGGGACCTGACTGGGACCAGAATAGACATTCCACAAATGGTCGGGGATGGGAACTTGGTGCAGATATGTGGAAGGGACAAAATGGTGCTTCACATCCAGAGCTGTCCTCAACATCCCAGAAAGAGGATTATCCTGTGAAGTCCATGGCAGATGAACTGCTGGCAGGGCCAGCATTGCAGAGGTCTCAGAGTGAAAGTAACTATCATGGAGTTCTGGCAAAAAGTGTTGAAATAAAAAGGTCCAGTGACAGCACTCCAGCAAAAGAAACTTCTAGGTCTCTACCTAACACTGTTAATGAGAAGATGCCTGAACTGTCTCAATCATCAACTGATGATGATGATGCCACTCATTTTAGCCTAGCTTATCTTTCTACACTTGACATTTCGACAGAACTTGCTCATACTGAGTTGTATAATCAGTGTACAAGCCTATTGAATAAGAAAGCAAATCCAGCTGCCAATGAAGACATTTCTAAACATGTAAAATTAGAGGATGGTGTTAGAGCAGGTCCAGCCGCCAATGATGACCTTTCTAAACATGTAAAATTAGAGGATGGTGCGAGAGCAGGTCTAAAGCTCAACACCTTGACAACAAGTCCTCTTTTTCCTGCAATAAATGACTCCATTTATAAGAGAGCCATGGACCTGTACAAGAAGCAGAGTACAGAGATAAGAACGAGGCCCATTGCAGCAGTTTCTGATCAAGAGATGGTAGAAACAAATGTCCCTCTTTCTGATGAGGTAAAAGCAGAGGAGCCTGTCCCTTCTCCTGACCAAGAAACATCAAAGGAGATGATTCAAACATTCACTCAGAAAAAGGCAGAGGAACCTGTAGCAGTTGCTGGTCATGAGATACATGAGGAGCTAGCCTCTGCTCCCAGCCATGAAGTGCAGTCTGAAGAGGCAGCGGATGCAGATGGGCCAATACCTATGGTGATGGATGAAATGGCTCAGGAGCCAGAGAAACCAGTGGATGGGGATGGATGCTTCCCATCTCTTGGAAATTCATCTCAAACAGCTCTGGCCACAGCCATGTCGTCCGATGATAATGATGTGAAGGGTCTTAGCAAGACTGATGCCGGTGGTGATGATGTGAAGGGTGCCAGCAAAAGCGACGACAACCATTCTGCAGATGATGTTGATGAAATTCAGGCTGCGTCGGGTCATGCAATGAGTGTTCCCTCTTTTTGTCCAGATGGTTCCCCAAAGGCATGTGAGGCTTTGATGCCAGAGTCAAATGAGTCTGAGTCGGTAATTTTGAGTCGGATACATCATTCTCCTGAAAGTACACATTGA 3837 47.15 MNLGELIGKGQFGHKRGIYLQVFDMPRSSRHKSHRESKHSSRDYSDSEKEKDTSLKDRKGREDGGTRVLKDSASGEKRKHAAKSPESKDLNGQFVEESGASKRRKDRVSDGVNDRWTGGEEESQKSKDSKSRRRDESGGKVESKHRDSSRKEGRGAGLEREKKGKEGKIETLGENVVELDGVDSERSRKQGSKSGGLEEERVARKMAENTEQKNDAKELNLQDELRNPEPDNQLERRIRKRRDGSGDWDKHQDNIRDFSDRQLSSRDDTAIDGRYKDEKYTDKYPEDLDRDNRHRDDKQRDERLVRDRTSRLDDKHLRDDKETVEIQQKKSEPPDSDRNRDRNRDRDHEKERERDYDRDWDRDRDRDRDHDRDRDRDRERERDRDRERDRDRERDRDRERDRDRDRDRERDRDRDRERDRDRERDRDRDRDRERDRDHHRDRDRDRDLDQGRERDRNRDWDRDGHRDRDHSSHLDDRSSKYKDDRGKKKSPDDYEEHSITKSRSAKGNYSDMEKKSWSSSKVESDADRGRSHSRPAQVDTTARRASPGSSSQVMDENRYIKQEDIKYKDFVTDHATPMREVTGASGAQDRVSKYRSIEKPFKLDDSNLGALSVERSLSSKASPVGLMDRSPSTTSRYMNRAGVRRSLDIEETGRRSTGSNDARESSVNEDRLSRDLTSDKLLADESSQADSPAYNRTSQSNPSLIPPLLAFRGGVESPFLEEGSRINSSTRYKRGGEPNVVRGHGNAWKGVPNWSSPVPNGFIPFQHGPPHAGFQALMPQFPSPIFGVRPSMEINHAGIPYHIPDADRFPAHLRPLGWQNMVDGPGISHLPGWDGNNVVFRDEPQMYGGPDWDQNRHSTNGRGWELGADMWKGQNGASHPELSSTSQKEDYPVKSMADELLAGPALQRSQSESNYHGVLAKSVEIKRSSDSTPAKETSRSLPNTVNEKMPELSQSSTDDDDATHFSLAYLSTLDISTELAHTELYNQCTSLLNKKANPAANEDISKHVKLEDGVRAGPAANDDLSKHVKLEDGARAGLKLNTLTTSPLFPAINDSIYKRAMDLYKKQSTEIRTRPIAAVSDQEMVETNVPLSDEVKAEEPVPSPDQETSKEMIQTFTQKKAEEPVAVAGHEIHEELASAPSHEVQSEEAADADGPIPMVMDEMAQEPEKPVDGDGCFPSLGNSSQTALATAMSSDDNDVKGLSKTDAGGDDVKGASKSDDNHSADDVDEIQAASGHAMSVPSFCPDGSPKACEALMPESNESESVILSRIHHSPESTH* 1279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20740370 20751493 + Vvi16g911 Vvi16g911 778560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g911 1278 MobiDBLite consensus disorder prediction 1166 1278 - -
Vvi16g911 1278 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 25 354 - -
Vvi16g911 1278 PANTHER LOW PROTEIN: ZINC FINGER CCCH DOMAIN PROTEIN 341 1278 - -
Vvi16g911 1278 Coils Coil 202 227 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 643 681 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 877 891 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 618 707 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 682 705 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 23 560 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 924 961 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 98 534 - -
Vvi16g911 1278 PANTHER OS05G0595500 PROTEIN 25 354 - -
Vvi16g911 1278 PANTHER OS05G0595500 PROTEIN 341 1278 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 618 640 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 1199 1229 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 934 952 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 38 86 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 1261 1278 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 847 891 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 1178 1198 - -
Vvi16g911 1278 MobiDBLite consensus disorder prediction 535 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g911 K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 - vvi:100265790 1632.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g138 Vvi16g911 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g911 . . . . Bpe03g00186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g02021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004460 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 42