Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g912 ATGATAATTAAGCGCAATTTGAAATCGAAAATGCCGAGTATGAAACGATGCAGACTCGGCCACTCGGCGGCGGACGACGATGAGTCGCCGGCGGCGAAGAAGAAGCGTAAGATGAATGGTTATTTCCCTCTGAATCTGCTCGGGGACGTCGCAGCGGGGATAATTCCGTTGAGCGGGTACGGCCTTCAACGGATATTCGGCGGTCACGTCGGAGATGACGGAGACGGCGTGGGAGCTATGAATCGTGCGGCTCAGGTTCACCGGCCGCCGCTGGTGAGGACGTCAAGGGGACGAGTTCAGGTACTCCCATCTCGATTCAACGATTCAATTCTTGATAATTGGAGGAAAGAGAGCAAACCCAATGCTCGTGAGATCATTCTAGATGAGGATTTCGAACCGGAAAAAGAAAAACCTTGTTCCAAAACCCCGAAACAGAGTAAGTATTCCAGTTCGCGCAGTTCACTTACTTCTCTGCATGAGCAATTGGCAGAGGTCGAGCGGTATCCAACTGACGAAGTTGAGGAAAAGTTCGGTTTGGGAAGAGTCGATAGAGAGAGTAAAGGTGGTAGTAGGTTAGAGGAGTTTATTTCAGGTGATATAGTATGGGCGAAGTCGGGGAAGAAGGATCCTTTCTGGCCTGCCATTGTCATTGATCCAACCTCGCAAGCACCCGGGCAAGTTTTGAGTTCATGTATTGCTGGCGCAGTTTGTGTAATGTTCTTTGGCTATTCTGGAAATGGGAGTCGAGATTATGGGTGGATTAAGCGTGGGATGATATTTTCATTCATAGATAATGTAGAAAGGTTCCAGGGACAAAGTGACTTGAATGATTGTAAGCCCAGTGATTTTCGGACAGCTATAGAGGAGGCATTTCTTGCAGAAAATGGTTTTATTGAGAAGCTGACAGAGGATATAAATGTGGCTTCTGGGAAACCCAATTATCTTGAATCCACTAGAGGGATCCAAGAGGCTACTGGTTCGAATCAGGATCAAGAATGCGATTCTCAGGACCAGGCAAGTGGTGATGTATTTAGGAAGAAGGACACATGGTCTTGTGATGGCTGCGGCTTGAGAATTCCTCTTAAAAGTACAAAGAAAATGAAAGTTTTGACTCCTAAAGGCCGTTTTCTATGTAAAACCTGTGATAGGTTGTTAAAATCCAAACAGTATTGTGGCATATGCAAGAAGATGCAGAATCAATCAGACAGTGGGACTTGGGTGCGCTGTGATGGTTGCAAAGTTTGGGTGCATGCAGAGTGTGGTAAAATTTCCAGTAAACTTTTCAAGAATCTTGGGGCTACTGATTATTACTGCCCTGCTTGCAAAGCAAAGTTTAATTTTGAATTGTCAGATTCAGAAAGATGGCAGCCTAAAGTCAAATGCAACAAAAACAACAGTCAATTAGTGCTGCCTAACAAGGTTACAGTTACTTGCTCGGGTGTGGAAGGCATATATTTCCCAAGCATTCATTTAGTTGTGTGCAAGTGTGGGTCATGCGGGATGGAAAAGCAATCACTTACTGAATGGGAGCGTCACACAGGTTCCAAAGGGAAAAATTGGAAGACAAGTGTTAGGGTAAAAGGTTCCATGTTGTCATTGGAGCAATGGATGCTGCAGGTTGCAGAGTATCATGATAATAGTTTTCTTGCTGTTAACCCTCCTAAACGACCTTCTATAAGAGAACGAAGACAGAAGTTGCTTACTTTTTTGCAAGAAAAATATGAGCCTGTTCATGCTAGGTGGACAACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATTATATGCAACAGATGTCAAATAGCCGTCCATCAAGAGTGTTATGGGGCAAGAAATGTTCGGGATTTCACTTCATGGGTTTGCAGAGCATGTGAAACACCTGATGTTGAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACTGATATTGAGACATTATGGGTTCATGTCACTTGTGCTTGGTTTCAACCTGAAGTTTCTTTCTCAAGTGATGAAAAGATGGAGCCTGCTGTTGGCATCTTGAGCATTCCATCAAATTCTTTTATAAAGATTTGCGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTATGGAGTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAGGGCTCCAAATCCTGATACTGTTTTAATCATTCAAACTCCCCTAGGGGTTTTCTCTACCAAAAGCCTCATCCAAAATAAGAAGAAGTCCGGTTCAAGGTTAATTTCATCCAACAGGATAGAACTTCAACAGATTCCTACAGTGGAAACTGACGAGTTTGAGCCCTTCTCTGCTGCAAGGTGCCGGATTTTTAGAAGATCAAAATCAAACACTAAGAGGACAGTAGAAGAAGCCATTGCCCACCAAGTCAAGGGCCCCTTCCATCATTCTTTGAGTGCAATAGAAAGCTTGAATATATTCAGAGAAGTGGAAGAGCCTAAAAATTTTTCTACTTTCAGGGAACGGCTTTACCACTTGCAGAGGACTGAAAATGATAGGGTTTGCTTTGGTAGATCTGGAATACATGGCTGGGGCCTCTTTGCACGACAAGCTATTCAAGAAGGAGATATGGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGTATTGCAGATATGAGGGAGGTGCGCTACCGATTAGAAGGAAAAGACTGCTATCTCTTTAAGATCAGTGAAGAAGTGGTAGTCGATGCTACAGATAAAGGAAACATTGCCCGCCTAATCAACCACTCGTGTGCCCCCAACTGCTATGCAAGGATCATGAGTGTGGGTGACGATGAGAGCAGGATTGTTCTTATTGCTAAGACCAATGTCGCTGCTGGCGATGAGCTAACGTATGACTACTTGTTTGATCCCGATGAGCCGGACGAATGCAAGGTCCCCTGTTTGTGTAAAGCTCCAAACTGCAGAAAATTCATGAATTAG 3057 44.1 MIIKRNLKSKMPSMKRCRLGHSAADDDESPAAKKKRKMNGYFPLNLLGDVAAGIIPLSGYGLQRIFGGHVGDDGDGVGAMNRAAQVHRPPLVRTSRGRVQVLPSRFNDSILDNWRKESKPNAREIILDEDFEPEKEKPCSKTPKQSKYSSSRSSLTSLHEQLAEVERYPTDEVEEKFGLGRVDRESKGGSRLEEFISGDIVWAKSGKKDPFWPAIVIDPTSQAPGQVLSSCIAGAVCVMFFGYSGNGSRDYGWIKRGMIFSFIDNVERFQGQSDLNDCKPSDFRTAIEEAFLAENGFIEKLTEDINVASGKPNYLESTRGIQEATGSNQDQECDSQDQASGDVFRKKDTWSCDGCGLRIPLKSTKKMKVLTPKGRFLCKTCDRLLKSKQYCGICKKMQNQSDSGTWVRCDGCKVWVHAECGKISSKLFKNLGATDYYCPACKAKFNFELSDSERWQPKVKCNKNNSQLVLPNKVTVTCSGVEGIYFPSIHLVVCKCGSCGMEKQSLTEWERHTGSKGKNWKTSVRVKGSMLSLEQWMLQVAEYHDNSFLAVNPPKRPSIRERRQKLLTFLQEKYEPVHARWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCRACETPDVERECCLCPVKGGALKPTDIETLWVHVTCAWFQPEVSFSSDEKMEPAVGILSIPSNSFIKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHSLVKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSTKSLIQNKKKSGSRLISSNRIELQQIPTVETDEFEPFSAARCRIFRRSKSNTKRTVEEAIAHQVKGPFHHSLSAIESLNIFREVEEPKNFSTFRERLYHLQRTENDRVCFGRSGIHGWGLFARQAIQEGDMVLEYRGEQVRRSIADMREVRYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCAPNCYARIMSVGDDESRIVLIAKTNVAAGDELTYDYLFDPDEPDECKVPCLCKAPNCRKFMN* 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20769709 20783861 - Vvi16g912 Vvi16g912 778561

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g912 1018 Pfam PWWP domain 198 291 IPR000313 -
Vvi16g912 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 445 IPR013083 -
Vvi16g912 1018 ProSiteProfiles PWWP domain profile. 197 265 IPR000313 -
Vvi16g912 1018 SUPERFAMILY Tudor/PWWP/MBT 195 296 - -
Vvi16g912 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 634 IPR013083 -
Vvi16g912 1018 Pfam PHD-zinc-finger like domain 639 751 - -
Vvi16g912 1018 Gene3D SET domain 811 1018 IPR046341 -
Vvi16g912 1018 MobiDBLite consensus disorder prediction 126 142 - -
Vvi16g912 1018 Gene3D - 189 304 - -
Vvi16g912 1018 SMART set_7 876 999 IPR001214 GO:0005515
Vvi16g912 1018 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1018 - -
Vvi16g912 1018 SUPERFAMILY FYVE/PHD zinc finger 583 648 IPR011011 -
Vvi16g912 1018 CDD PHD_ATX3_4_5_like 585 631 IPR042011 -
Vvi16g912 1018 ProSiteProfiles Extended PHD (ePHD) domain profile. 637 752 IPR034732 -
Vvi16g912 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 754 IPR013083 -
Vvi16g912 1018 SMART PHD_3 585 632 IPR001965 -
Vvi16g912 1018 SMART PHD_3 390 442 IPR001965 -
Vvi16g912 1018 SMART PHD_3 696 752 IPR001965 -
Vvi16g912 1018 ProSiteProfiles Zinc finger PHD-type profile. 583 634 IPR019787 -
Vvi16g912 1018 CDD PHD_TCF19_like 391 441 - -
Vvi16g912 1018 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1018 IPR025780 -
Vvi16g912 1018 ProSitePatterns Zinc finger PHD-type signature. 586 631 IPR019786 -
Vvi16g912 1018 Gene3D - 452 546 IPR010919 -
Vvi16g912 1018 ProSiteProfiles SET domain profile. 876 993 IPR001214 GO:0005515
Vvi16g912 1018 SUPERFAMILY SET domain 864 1018 IPR046341 -
Vvi16g912 1018 Pfam SET domain 887 992 IPR001214 GO:0005515
Vvi16g912 1018 Pfam PHD-finger 390 443 IPR019787 -
Vvi16g912 1018 ProSiteProfiles Post-SET domain profile. 1002 1018 IPR003616 -
Vvi16g912 1018 MobiDBLite consensus disorder prediction 19 33 - -
Vvi16g912 1018 CDD SET_SETD1-like 863 1014 - -
Vvi16g912 1018 Pfam PHD-finger 598 632 - -
Vvi16g912 1018 PANTHER PHD FINGER PROTEINS 1 1018 - -
Vvi16g912 1018 SUPERFAMILY FYVE/PHD zinc finger 387 446 IPR011011 -
Vvi16g912 1018 ProSiteProfiles Zinc finger PHD-type profile. 388 444 IPR019787 -
Vvi16g912 1018 Coils Coil 1017 1018 - -
Vvi16g912 1018 MobiDBLite consensus disorder prediction 8 33 - -
Vvi16g912 1018 MobiDBLite consensus disorder prediction 126 155 - -
Vvi16g912 1018 CDD ePHD_ATX3_4_5_like 640 751 IPR041955 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g912 - - - vvi:100246975 2053.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g714 Vvi16g912 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007355 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14164 PF13832 zf-HC5HC2H_2 3.40E-27 CL0390 Vvi TR