Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g914 ATGGCGATAATTTCCGAATACCAGGAGGAGGAAAGGCCTCCGTCTACATCCACATTCAATGGAACTCTCGATCATTCGAATCCGCTGGAGTTTCTGAGGTCGGTGTTCCTGTTTGTTTCTCGGGAAACCGATTTCTTCAAGAGGGAGGCAGCGGAGAAGGAGGTGGCGATGCTGGCGAGGGGGATCAGGGAGGAGGAGAGGAAGAAGAAGGCGGAGGAGAGGGACCTGGAGGATAAGGGAAAGGCGGAGAAGCGGCTGAAGGAGACTAAGGTGGAGCCTGAGAAGAAGGCGGAGAAGGCGGAGAAGGCGAAAGAGAAGGTGGAGGATGCGAAGGCAGAGGAGAAGGAGGGAACGCAAGTTCCAAATAAAGGGAACGGCCTTGATCTGGAGAAGTATTCCTGGATGCAGACACTGCAAGAGGTTACTGTTACTGTGCCAGTCCCTCCTGGAACCAAATCAAGGTTTATAGTATGTGACATAAAGAAGAATCATTTGAAGGTTGGGCTTAAGGGCCACCCTCCAATAATTGATGGAGAACTCTCTAAGCCTATCAAGCCTGATGATTGCTTTTGGAGCTTAGAGGATCAGAAATCCGTCTCTATCCTGTTGACCAAGCATAACCAAATGGAGTGGTGGAAATCTTTGGTGAAAGGCGATCCTGAAATTGATACCCAGAAAGTTGAACCAGAGAACAGCAAGCTGTCTGACCTTGATCCAGAAACCCGCCAAACTGTGGAAAAGATGATGTTTGACCAGAGACAGAAAACTATGGGACTTCCAACAAGCGACGAGATGCAGAAACAGGAGATTCTAAAGAAGTTCATGGCTGAGCATCCGGAGATGGACTTTTCCAGGGCAAAGATTTCATAA 870 48.85 MAIISEYQEEERPPSTSTFNGTLDHSNPLEFLRSVFLFVSRETDFFKREAAEKEVAMLARGIREEERKKKAEERDLEDKGKAEKRLKETKVEPEKKAEKAEKAKEKVEDAKAEEKEGTQVPNKGNGLDLEKYSWMQTLQEVTVTVPVPPGTKSRFIVCDIKKNHLKVGLKGHPPIIDGELSKPIKPDDCFWSLEDQKSVSILLTKHNQMEWWKSLVKGDPEIDTQKVEPENSKLSDLDPETRQTVEKMMFDQRQKTMGLPTSDEMQKQEILKKFMAEHPEMDFSRAKIS* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20803337 20807607 - Vvi16g914 Vvi16g914 778563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g914 289 MobiDBLite consensus disorder prediction 10 25 - -
Vvi16g914 289 MobiDBLite consensus disorder prediction 1 25 - -
Vvi16g914 289 SUPERFAMILY HSP20-like chaperones 116 231 IPR008978 -
Vvi16g914 289 Gene3D - 123 250 IPR008978 -
Vvi16g914 289 CDD p23_NUDC_like 132 216 - -
Vvi16g914 289 MobiDBLite consensus disorder prediction 58 118 - -
Vvi16g914 289 PANTHER NUCLEAR MIGRATION PROTEIN NUDC 9 289 - -
Vvi16g914 289 Coils Coil 48 82 - -
Vvi16g914 289 Coils Coil 96 120 - -
Vvi16g914 289 MobiDBLite consensus disorder prediction 58 126 - -
Vvi16g914 289 Pfam CS domain 131 205 IPR007052 -
Vvi16g914 289 PANTHER NUCLEAR MOVEMENT PROTEIN NUDC 9 289 IPR037898 -
Vvi16g914 289 ProSiteProfiles CS domain profile. 127 216 IPR007052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g914 K25866 NUDC; nuclear migration protein NudC - vvi:100260589 510.76
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g914 . . . . . . . . . . . . . . . Cpe05g00602 . . . . . . . . . . . . . . . . . . . . . Chy09g01436 . . . . . . Bpe12g00353 . . . . . . . . . . Cpe13g00313 Bhi12g00632 . . Lac11g0151 Hepe06g0789 . Lcy12g0130 . . . . . . . Lsi09g00024 . . Cme09g01982
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006262 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38