Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g916 ATGGATTTGGACCTTGTTGATGATCAGTACTACACCTTCTTCAGTTGTTCATTAAACAAATCAGAATCATATGATCTGACACCCTATACTTGCCATATTTTTGGTGGTAGCACAGTTTATGGTGTGAGTTCCGATGATGATCTTGGTGACTTGGATCTATACTCATGCCAGAGGATCGACAATGTTATAGTACAAAGTAATGTGGAAAATTCCTTTCATGTGAAGTGGGCAAACACAATATGTGGAGACTGCGAAGCAGAAGGTGGGAAATGCAGGCCCAAGAGTAATAGCATGAAACATGAAACAGAATGCATCCACAAACACCGCAAACCAGAAAAAGATGCACCAAGAATACCGGAGCTGGTTGCAGGAATAATCCTTGGTTTCCTTTTTCTTGGGTCAATAGCATTTGCACTCTACCATGTTTATAGCTTAGACAAATCACAAAGAGAAAATAGAAAGAAGATCGAAAAGTTTTTGGAAGATTATAGAGCTCTCAAGCCCTCGAGGTACTCGTACGCTGATATGAAGAAGATCACCCACCAGTTCAAGGATAAACTAGGCCAAGGAGCTTATGGAACTGTGTATAAAGGAAAGCTTTCAAATGAAGTTTTTGTTGCGGTAAAGATTCTCAATGACTCTAAGGGAAATGGGGATGAGTTTATCAATGAAGTGGCAACAATGGGCACAATCCACCATGTCCACGTGGTTCGCTTAGTTGGGTTTTGTGCAGATAGATTTAAACGAGCTCTCATCTATGAGTTCTTACCGAATGAGTCTCTAGAGAAGTTCATATTTCCAAAAAATGGGAAGAATCATTCACTTGGTTGGTTGAAGCTTCAAGATATTGCTTTAGGCATAGCCAAAGGAATTGAGTATCTTCACCAAGGATGTGATAAAAGAATTCTCCATTTTGATATTAAACCTCATAATATTTTGCTAGATCACAACTTTACTCCTAAGATCTCTGATTTTGGTCTAGCCAAATTGTGTTCCAAAGAGCAGAGTGTAGTTTCTATGACTACAGCTAGAGGGACGATTGGCTATATTGCACCAGAAGTGTTATCTAGGAATTTTGGGAATATAACCTATAAATCAGATGTTTATAGCTTTGGAATGTTGTTACTTGAAATGGTTGGAGGAAGAAAAAATATTGATGTTACAATGGAGAAAACTGGACAAGTATATTTTCCAGAATGGGTCTACAATCATTTAGATCAAGGGGAAGAGTTACATATCCGAATCGAGGAAGAAGGAGATGCTAAAATAGCAAAGAAACTAACAATTGTGGGACTTTGGTGCATTCAATGGTACCCAATAGATCGTCCTTCAATGAAAGCTGTAGTTCAAATGTTGGAAAGAGAAGACAATTTAATCATGCCTCCTAATCCTTTTACTGCTACAGATCGAATTATGGTCAAAGATCGAATGAGAATAAATACAAGCAAGCCACCAAGACCTCTTCCTGAAAAAGAGTTGGAAGTTATCACAGAATTAGAGTGA 1503 38.26 MDLDLVDDQYYTFFSCSLNKSESYDLTPYTCHIFGGSTVYGVSSDDDLGDLDLYSCQRIDNVIVQSNVENSFHVKWANTICGDCEAEGGKCRPKSNSMKHETECIHKHRKPEKDAPRIPELVAGIILGFLFLGSIAFALYHVYSLDKSQRENRKKIEKFLEDYRALKPSRYSYADMKKITHQFKDKLGQGAYGTVYKGKLSNEVFVAVKILNDSKGNGDEFINEVATMGTIHHVHVVRLVGFCADRFKRALIYEFLPNESLEKFIFPKNGKNHSLGWLKLQDIALGIAKGIEYLHQGCDKRILHFDIKPHNILLDHNFTPKISDFGLAKLCSKEQSVVSMTTARGTIGYIAPEVLSRNFGNITYKSDVYSFGMLLLEMVGGRKNIDVTMEKTGQVYFPEWVYNHLDQGEELHIRIEEEGDAKIAKKLTIVGLWCIQWYPIDRPSMKAVVQMLEREDNLIMPPNPFTATDRIMVKDRMRINTSKPPRPLPEKELEVITELE* 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20826878 20828694 - Vvi16g916 Vvi16g916 778565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g916 500 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 477 IPR045874 GO:0004672
Vvi16g916 500 ProSiteProfiles Protein kinase domain profile. 181 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g916 500 Pfam Protein kinase domain 183 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g916 500 SUPERFAMILY Protein kinase-like (PK-like) 163 453 IPR011009 -
Vvi16g916 500 Gene3D Phosphorylase Kinase; domain 1 153 255 - -
Vvi16g916 500 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Vvi16g916 500 PANTHER RECEPTOR-LIKE KINASE 9 477 - -
Vvi16g916 500 SMART serkin_6 181 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g916 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Vvi16g916 500 Gene3D Transferase(Phosphotransferase) domain 1 256 460 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76292 PF00069 Pkinase 3.20E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g916 - - vvi:100258962 1017.68