Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g919 ATGAAGGCTTTCGTCTCTTCCTTTTTGCTCTACACAGTCCTGTTGTGCATCCATCTATGGCGTCCCGTCACTGCCAGTAGCATGCAAAACGAAACAGATCGACTTGCGTTGATTGCTTTCAAGGATGGAATCACCCAGGATCCACTTGGGATGCTGAGTTCTTGGAATGACTCGCTCCACTTTTGCCGGTGGTCAGGAGTGTATTGCAGTCGCAGGCATGTCCACAGAGTCACCAAATTAAATCTCTTTTCTTATGGACTGGTGGGATCCCTCTCACCCCATATCGGGAACCTCACCTTTCTTAGAACAATAGTCCTCCAAAATAACAGCTTCCATGGCAAAGTGCCTTCTGAGATCGGTGCTCTGGGTCTCACTAGGAACAATCTCACAGGAAAGATCCCAGCTTCACTCGGGAACCTCTCATCTCTCAGTCTTTTTTCTGCAATGTACAACAGTCTGGAAGGAAGCATTCCTGAGGAGATTGGTAGAACAAGTATAGATTGGCTTCACTTAGGTTTCAACAGATTAACAGAGGGAAGCCTTAGTCAGGATATGGTACCACCAAATTTGGGGAGGCTGCAAAATCTTCGAGATATAACCATGGGCTGGAATCAACTCTCCGGAATAATACCATCCTCACTCGGTAACTTAACCTTGTTGAATAATCTTGATTTAAGCGGCAACAACTTGATGGGAGAAATACCTTCCAGTCTAGCAGCCTATGTCTCTGAAAGCAGATTATCAAGTGGTCTTCCAAACACTTTAGGTAACTGTGTGGTAATGCGGGATCTTCGACTTACTGGTAATTTCTTTGAAGGAGAGATTCCCACATCGCTGCAAACTCTTCGAGGTTTAGAATACTTGGATCTTTCTCGCAACAAATTTTCTGGAGAAGTACCCTCAGTCAAGGCCAATGTCACAATTTCAGTTGAAGGAAACTATAATCTTTGTGGAGGCGTTCCCAAGCTTCATCTTCCCATATGTGTCACCTCATCTACTGGCGAAAAGAGGAAGCGTCCTGCTGCCAAACTACTCGTTCCGGTAATCATTGGAATTACATCCTTGAGTTTGTTGGCTTTCTTCGTTATTATCCTTCTGAGAAGAAAAAAATCGAGGAATGATGTCTCTTACACACAATCATTCAACAATCAATTCCTAAGAATTTCATTCGCAGACCTCCATAAAGCTACTGAAGGCTTCTCCGAGTCCAATATGATCGGAGCTTCCAAGAGCTTTATGTCCGAATGCAAGGCCTTGAGAAAAATCCGGCATAAGAATCTTGTCAAAGTCTTGAGTGCTTGCTCTAGCTTGGACTTTCAGGGTAATGATTTCAAGGCTCTTGTGTTTGAGTTGATGCCACAAGGGAATTTGGATGGATGGTTACATCCAGAAGTAAGAGAGGATGAACCCCAAAGGCTTACCCTTCTACAGAGACTGAATATCGCTATTGACGTTGCTTCAGCACTGGAGTATCTTCACACTCAATGTGATGACATTATTGTTCATAATGATCTTAAGCCCAGCAATGTTCTTCTTGACAATGATATGATGGGCCATATCGGTGATTTTGGTATTGCAAAGATCACTTCTGTTGTTTTCAGCACTACAATTGCTACTAGTGTTGGCACAGACCAAAATACCTCGAATGCAGTGAAAGGATCCATAGGCTACATTGCTCCAGAATATGGTGTGAGTGGCAAGGTGTCCACTGAGGGAGATGTGTATAGTTATGGAATCCTTTTATTGGAGATGTTTACCGGAAGAAGACCAACTGATAACAAGTTCCAAGATGGTCATACTCTTCATAGCTTCGTGAAAACGTCTTTGCCTGAGCGAGTCATGGAGGTCATAGATCAGCCTTTGCTTTTAGAGGCAGATGAAAGAGGTAAAATGAGGGAATGCATCATTGCAGTATTGCGAATCGGCATCACTTGTTCCATGGAATCACCAAAAGACCGAATGGAGATAGGTGACGCAGCCAATAAATTACACTCAATCAAGAACCTCTTCTTAAGGGAGGCGGGTCATGGATAG 2034 43.61 MKAFVSSFLLYTVLLCIHLWRPVTASSMQNETDRLALIAFKDGITQDPLGMLSSWNDSLHFCRWSGVYCSRRHVHRVTKLNLFSYGLVGSLSPHIGNLTFLRTIVLQNNSFHGKVPSEIGALGLTRNNLTGKIPASLGNLSSLSLFSAMYNSLEGSIPEEIGRTSIDWLHLGFNRLTEGSLSQDMVPPNLGRLQNLRDITMGWNQLSGIIPSSLGNLTLLNNLDLSGNNLMGEIPSSLAAYVSESRLSSGLPNTLGNCVVMRDLRLTGNFFEGEIPTSLQTLRGLEYLDLSRNKFSGEVPSVKANVTISVEGNYNLCGGVPKLHLPICVTSSTGEKRKRPAAKLLVPVIIGITSLSLLAFFVIILLRRKKSRNDVSYTQSFNNQFLRISFADLHKATEGFSESNMIGASKSFMSECKALRKIRHKNLVKVLSACSSLDFQGNDFKALVFELMPQGNLDGWLHPEVREDEPQRLTLLQRLNIAIDVASALEYLHTQCDDIIVHNDLKPSNVLLDNDMMGHIGDFGIAKITSVVFSTTIATSVGTDQNTSNAVKGSIGYIAPEYGVSGKVSTEGDVYSYGILLLEMFTGRRPTDNKFQDGHTLHSFVKTSLPERVMEVIDQPLLLEADERGKMRECIIAVLRIGITCSMESPKDRMEIGDAANKLHSIKNLFLREAGHG* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20848482 20851612 + Vvi16g919 Vvi16g919 778568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g919 677 Gene3D Ribonuclease Inhibitor 183 240 IPR032675 -
Vvi16g919 677 Gene3D Ribonuclease Inhibitor 241 320 IPR032675 -
Vvi16g919 677 ProSiteProfiles Protein kinase domain profile. 349 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g919 677 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Vvi16g919 677 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vvi16g919 677 SUPERFAMILY L domain-like 29 317 - -
Vvi16g919 677 Pfam Protein tyrosine and serine/threonine kinase 408 601 IPR001245 GO:0004672|GO:0006468
Vvi16g919 677 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 184 239 - -
Vvi16g919 677 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 122 177 - -
Vvi16g919 677 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 407 673 - -
Vvi16g919 677 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 306 408 - -
Vvi16g919 677 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 241 302 - -
Vvi16g919 677 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 5 122 - -
Vvi16g919 677 Gene3D Transferase(Phosphotransferase) domain 1 456 673 - -
Vvi16g919 677 Gene3D Phosphorylase Kinase; domain 1 388 455 - -
Vvi16g919 677 SMART serkin_6 383 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g919 677 SUPERFAMILY Protein kinase-like (PK-like) 373 663 IPR011009 -
Vvi16g919 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 500 512 IPR008271 GO:0004672|GO:0006468
Vvi16g919 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 306 408 - -
Vvi16g919 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 184 239 - -
Vvi16g919 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 122 177 - -
Vvi16g919 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 5 122 - -
Vvi16g919 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 241 302 - -
Vvi16g919 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 407 673 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g919 - - - vvi:100265904 878.241
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76293 PF07714 PK_Tyr_Ser-Thr 5.80E-31 CL0016 Vvi PK