Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g92 ATGGACCGTGCCGAGCTCACTACTGACCAGGTTCTGAAGAGGGACATCCCATGGGAGACGTACATGACTACGAAGCTAATAACTGGAACATGTCTTCAGCTGTTGAGGCGTTACGATAACAGATCTGAGAGTCAAAGAGCTGTATTGCTTGATGATGATGGTCCTGCTTATGTTAGGGTGTTTGTGAGCATTTTACGTGATATATTCAAGGAAGAAACAGTTGAATATGTGCTGGCACTGATTGATGAAATGCTAACTGCAAATCCAAAAAGAGCCAAACTATTCCATGATAAGTCTCTTGCTAATGAAGATACTTATGAACCTTTCTTAATTTGTAGAGTTAACATTTGGTATGGTGTTCAGACTTTTTTATGTTGCCTAGAAGCTCCTAGGCCACAGAAAGTCAAAATTATGTTATGCAAACAATTGCTTTGGAAAGGTAATTGGTTCGTACAAGAGAAGAGCTGTAAGATTCTGGCTCTGATAGTGAGTGCGAGGCCCAAAACCCAGGATGGTGTTCTTTCTAATGGGGAATCCTCAAACTCAAAGAAGAAATTCGTTACTATTGACGATGTGTTGAGAGGATTGGTGGAATGGCTTTGTGCACAGCTAAAGAAGCCTTCACATCCTACCCGTGGCATTGCCATTGCTATCAGTTGCCTTGCAACATTACTGAAGGAACCCTTGGTCAGATCTTCCTTTGTTCAAGCAGATGGGGTGAAGTTGCTTATCCCTTTAATTTCTCCAGCATCCACTCAGCAATCTATCCAGCTACTTTATGAAACTTGTCTTTGTGTTTGGCTCTTATCTTATTATGAACCTGCAATCGAGTACTTGGCTACTTCTAGAACCCTACCACGACTAGTAGAGGTTGTTAAGAGTTCAACAAAAGAAAAGGTTGTCAGGGTTGTTGTCTTGACCCTTAAGAACTTGCTTTCAAAGGGGGCGTTTGGTGCTCAGATGGTAGACCTTGGACTGCTGCAAATTGTTCAGAGTCTGAAAGCACAGGCATGGAGTGATGAGGACCTGATGGAGGCTCTGAATCAACTAGATGAAGGGCTGAAAGCTAACATTAAGAAATTGAGCTCGTTTGATAAGTACAAACAAGAAGTCCTCCTTGGCCATCTCGACTGGACCCCTGTTCACAAAGATCCCATGTTCTGGCGTGATAACATTAGTAACTTTGAAGAGAATGATTTCCAGATTCTTAGGGTCCTCATTACAATTTTGGACACGTCCAGTGACCCAAGGGCGCTGGCTGTAGCGTGCTTTGATCTGTCACAGTTCATTCAATACCATCCAGCAGGGAGGGTCATTGTAAACGATCTCAAGGCGAAGGAGCGGGTGATGAAACTGATGAACCATGAGAATGCAGAGGTTACCAAAAACTCCCTCCTCTGTATCCAAAGGCTCTTCCTAGGTGCCAAGTACGCGAGCTTTTTGCAGGCTTAA 1452 43.39 MDRAELTTDQVLKRDIPWETYMTTKLITGTCLQLLRRYDNRSESQRAVLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRAKLFHDKSLANEDTYEPFLICRVNIWYGVQTFLCCLEAPRPQKVKIMLCKQLLWKGNWFVQEKSCKILALIVSARPKTQDGVLSNGESSNSKKKFVTIDDVLRGLVEWLCAQLKKPSHPTRGIAIAISCLATLLKEPLVRSSFVQADGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLATSRTLPRLVEVVKSSTKEKVVRVVVLTLKNLLSKGAFGAQMVDLGLLQIVQSLKAQAWSDEDLMEALNQLDEGLKANIKKLSSFDKYKQEVLLGHLDWTPVHKDPMFWRDNISNFEENDFQILRVLITILDTSSDPRALAVACFDLSQFIQYHPAGRVIVNDLKAKERVMKLMNHENAEVTKNSLLCIQRLFLGAKYASFLQA* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1224224 1231904 + Vvi16g92 Vvi16g92 777741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g92 483 Pfam V-ATPase subunit H 5 354 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vvi16g92 483 SMART arm_5 226 271 IPR000225 GO:0005515
Vvi16g92 483 SMART arm_5 272 313 IPR000225 GO:0005515
Vvi16g92 483 Gene3D - 374 475 IPR038497 -
Vvi16g92 483 Pfam V-ATPase subunit H 360 472 IPR011987 GO:0000221|GO:1902600
Vvi16g92 483 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 94 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vvi16g92 483 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 127 483 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vvi16g92 483 PIRSF V-ATP_synth_H 1 116 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vvi16g92 483 PIRSF V-ATP_synth_H 121 482 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vvi16g92 483 Gene3D - 5 362 IPR011989 -
Vvi16g92 483 SUPERFAMILY ARM repeat 8 473 IPR016024 -
Vvi16g92 483 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 127 483 - -
Vvi16g92 483 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 94 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g92 K02144 - vvi:100240790 846.269