Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g925 ATGGCATGGTTTAGCGGGAAGGTCTCTTTAGGAGGCTTTCCAGATCTGGCTGGGGCCGTGAATAAGCTCAGCGAGAGTGTGAAGAATATTGAAAAGAATTTTGATAGTGCTCTTGGATTTGAAGAAAAGTCTGATCCAGGTGGAGAAGTATCATCAGGATTATGGCCTTCAGCCATAGCATTTATGGGGCAAAAAGGTTCAGAAGCTGGAGAAAAACAAGAGGTGGAGACTGTTGGGTCCACCCATTCTCCTGCTGAAGAAGCTGCACCGGCCAAAGAAGGGAGAGAACCAGTCCAAATAGAAAAGGATCATGTGCATCCAGGCATCTCGGAGGAGGGAACAGATATTGTAATTGCAGACTCCAGAAAGAATGAGTCTGATTCACAATTGGTGTTGGCTGCTCCATCTGAATCCACTGTTGAGAGTGTCGAGTCAATGGATTCCTCTAATTACATCCAACAGGAAGCTAGTTCACACTCTGTGGAAGCCAACTCCCAAGCCGATGAAATTGATCAAGTTGAGGGTAGCATAATTATACCAGATGAATCCCATAAGGTCGCTGATTTGCATGAGAGCACAGGTGAGCAGAAGACAGGGGTGAATGAGATTGTGGATAAAATTTTACCCATTCAAACTGAAGCATCAATTGATAGCAAGGCTGGGATTGGGACTGAGCTCTCTGCTTCACATTCTGCTACTATTAAGGAAACTGAAAGTGCTGGTGAACTCTCTGAGGATCACTTACCTACTACACTTCCTTCATATGTGGCTTCAGAAACAGTTTCTGAGTTGGTTTCTCATGAAAATGATGTAATTGCTAAAGCAGTTGATCCGCAAGCCCATGATTACAACACTGACGTTAAGGAATCAGCATTTGGCTCAGGAACCAATGTGTCTGACTCTGTGGATTCTGCTGTTGAAGTTGAGAAGTTGAAGTTGGAGATGAAGATGCTGGAAACTGCACTCCAGGGGGCTGCAAGACAAGCTCAGGCAAAAGCTGATGAAATTGCAAAGCTGATGAATGAAAATGAGCAGCTAAAAATTGTAAATGAGGATTTGAAGAGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGGTATATGCCCTTACTAAGGAAAGGGATACACTACGAAGAGAACATAGCAGAAAAAGTGATGCTGCTGCCCTTTTGAAAGAAAAAGATGAAATAATCAACCAAGTTATGGCTGAGGGTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGATTAGAGAGTTTGAAGAAGAGAAGAAAGGATTGACAACCAAACTACAGGTGGAAGAGAATAAGGTGGAGAGTATTAAGAGGGACAAGGCAGCAACTGAGAAATTGCTGCAAGAAACAATTGAAAAACACCAGGCAGAGCTTGCAGCTCAAAAAGAATACTATACTAATGCTTTGACTGCAGCCAAGGAAGCTGAAGCATTAGCTGAGGCACGGGCTAACAGTGAAGCCAGAACTGAACTAGAAATTCGTCTAAGAGAAGCTGAGGAACGTGAAGCCATGCTGGTTCAGGCCCTTGAAGAACTAAGGCAAACGCTAAGTAGAACAGAGCAGCAGGCTGTGTTTAGAGAGGACAGGTTCCGCAGAGACATTGAGGATCTTCAAAAGCGTTATCAAGCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGGAGACAACAGCCAGAAGAGCAGAAGCTTGGGCTGCTGTTGAGAGATCTCTGAACTCTCGACTACAGGAGGCGGAGGCTAAAGCTGCAACTGCTGAGGAAAAAGAGAGATCTGTAAATGAACGCTTGTCGCAAACCTTATCTAGAGTAAATGTCCTTGAAGCACAGATTTCATGTCTTAGAGCAGAACAGACACAGCTGAGTAGGTCTCTAGAAAAGGAGAGACAGAGAGCAGCTGAAAATAGGCAGGAGTATCTAGCGGCAAAAGAGGAAGCTGACACTCATGAAGGCCGTGCAAACCAGCTAGAAGAAGAAATCAGGGAACTCAGGAAGAAACACAAGCAAGAGTTACAAGATGCGCTGGCACACAGGGAACTCTTGCAGCAGGAACTTGAACGGGAGAAAAATACACGTTTGGATTTGGAAAGGACAGCTCGTCTTCAGTCTTCTGCTGTATCCAATCAAACTCCAAACAAAAAGCAGAGTTCTGGTTTTGAAAATGGAAACTTGACTCGCAAACTTTCAAGTGCTAGCAGTGTAGGCAGCATGGAGGAAAGCTATTTTCTGCAAGCCTCTTTAGACCCATCTGACAGTTTATCTGAACGGAGAAACCTTGGAGAGGCAACCATGAGTCCATACTATATGAAGAGCATGACACCTAGTGCTTTTGAAGCTGCCATCCGTCAGAAGGAGGGTGAACTTGCCTCATACATGTCTCGTTTGGCATCCATGGAAGCCATCCGTGACTCTCTTGCTGAGGAGTTAGTTCAAATGACAGAGCAGTGTGAGAAATTGAGGGCAGAAGCTGCCTTTCTGCCTGGCATCCGGGCAGAGCTAGAAGCACTAAGACGGAGGCATTCTTCTGCATTAGAGCTAATGGGTGAACGTGATGAGGAGCTGGAAGAACTCCGTGCTGATATTGTGGACTTGAAAGAAATGTATAGAGAGCAGATAAACCTGCTTGTGAATCAGATTCAGAAAGCAAGTTCATCAACAGTCACCATCTGA 2796 44.71 MAWFSGKVSLGGFPDLAGAVNKLSESVKNIEKNFDSALGFEEKSDPGGEVSSGLWPSAIAFMGQKGSEAGEKQEVETVGSTHSPAEEAAPAKEGREPVQIEKDHVHPGISEEGTDIVIADSRKNESDSQLVLAAPSESTVESVESMDSSNYIQQEASSHSVEANSQADEIDQVEGSIIIPDESHKVADLHESTGEQKTGVNEIVDKILPIQTEASIDSKAGIGTELSASHSATIKETESAGELSEDHLPTTLPSYVASETVSELVSHENDVIAKAVDPQAHDYNTDVKESAFGSGTNVSDSVDSAVEVEKLKLEMKMLETALQGAARQAQAKADEIAKLMNENEQLKIVNEDLKRKSNEAETESLREEYHQRVAALERKVYALTKERDTLRREHSRKSDAAALLKEKDEIINQVMAEGEELSKKQAAQESQIRKLRAQIREFEEEKKGLTTKLQVEENKVESIKRDKAATEKLLQETIEKHQAELAAQKEYYTNALTAAKEAEALAEARANSEARTELEIRLREAEEREAMLVQALEELRQTLSRTEQQAVFREDRFRRDIEDLQKRYQASERRCEELITQVPESTRPLLRQIEAMQETTARRAEAWAAVERSLNSRLQEAEAKAATAEEKERSVNERLSQTLSRVNVLEAQISCLRAEQTQLSRSLEKERQRAAENRQEYLAAKEEADTHEGRANQLEEEIRELRKKHKQELQDALAHRELLQQELEREKNTRLDLERTARLQSSAVSNQTPNKKQSSGFENGNLTRKLSSASSVGSMEESYFLQASLDPSDSLSERRNLGEATMSPYYMKSMTPSAFEAAIRQKEGELASYMSRLASMEAIRDSLAEELVQMTEQCEKLRAEAAFLPGIRAELEALRRRHSSALELMGERDEELEELRADIVDLKEMYREQINLLVNQIQKASSSTVTI* 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 20956386 20986185 - Vvi16g925 Vvi16g925 778574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g925 931 Coils Coil 308 393 - -
Vvi16g925 931 Coils Coil 889 916 - -
Vvi16g925 931 MobiDBLite consensus disorder prediction 667 695 - -
Vvi16g925 931 Coils Coil 837 864 - -
Vvi16g925 931 Coils Coil 418 480 - -
Vvi16g925 931 Pfam TATA element modulatory factor 1 DNA binding 399 470 IPR022092 -
Vvi16g925 931 Coils Coil 611 740 - -
Vvi16g925 931 Coils Coil 508 581 - -
Vvi16g925 931 PANTHER GOLGIN CANDIDATE 5 1 928 - -
Vvi16g925 931 MobiDBLite consensus disorder prediction 65 96 - -
Vvi16g925 931 MobiDBLite consensus disorder prediction 739 766 - -
Vvi16g925 931 MobiDBLite consensus disorder prediction 733 766 - -
Vvi16g925 931 Pfam TATA element modulatory factor 1 TATA binding 812 916 IPR022091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g925 K20286 TMF1; TATA element modulatory factor - vvi:100250341 1642.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g925 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003944 1 1 1 1 1 1 3 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 40