Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g928 ATGGACGTGAAGAAGAAGAAGAAGACTGAGGGAGATGGTGATACAGCAATGGGGGAGGAGGCTCTGCCATTTCATAAGCTTTTGAGCTATGCAGATGGTTTGGATTGGGTTCTCATGGCACTGGGCACCTTGGGCTCCATTGTCCATGGCCTGGCCCAACCAGTAGGGTACTTGCTGCTTGGCAAAGCCCTCGACGCATATGGGACCAACATCAAGGATCCCGAAGCCATGGTTGATGCCCTCTACAAGGTTGTTCCTTATGTGTGGTATATGGCTGCCGCCATGTTTCCTGCCGGAATACTAGAGGTTGGGTGTTGGATGCATGCAAGTGAAAGACAGGTCTCACGTCTACGACTAGCATTCCTGAGGGCAGCCCTTAACCAGGAGATTGGAGCTTTTGACACTGATCTAACAAGTGGAAAAATCATCAGTGGAATAAGCAGCCACATGAGTATCATACAAGATGCTATAGGGGAGAAGTTGGGCCATTTTCTATCAAACATCGCAACGTGCTTCTCTGGAATATTGATCGCTGCCATTTGCTGTTGGGAAGTTTCACTGCTCACCTTGTTGGTTGTTCCTTTGGTTCTTGTGACTGGAGCCACTTATAGCAAGAAGATGAATGCCATTTCAGCTGCAAAAATGCATTTCCTGTCAGAAGCCACATCCATGATAGAACAGACACTATCTCAAATCAAAACAGTATTTGCATTCGTGGGAGAGAGTACTGCTGCCAAGTCTTTCTCAGAGTGCATGGACAAACAGTTCAGGATAAGCAAGAGAGAGGCAATAATAAAGGGAGTTGGGACAGGTTTGTTTCAAACTGTAACCACCTGTTGCTGGGCTCTGATCATTTGGGTTGGAGCCATTGTTGTCACAGCCAAGAGATCAAGTGGAGGAGACATCATAGCGGCAGTGATGAGCATTCTCTTTGGAGCTATATCACTCACTTATGCTGCACCAGACATTCAAATCTTTAATAGTGCAAAGGCTGCAGGAAATGAGGTTTTTCAGGTGATCAAAAGAAAACCTGCCATAAGCTATGATTCTGAAGGGAAAACACTCGAGAAGATCAATGGCAATATTGACATGCAGGATGTATACTTCACCTACCCATCCCGGAAAGAGAGATTAATCCTTGATGGATTTTCATTTTCCATCCCAGCAGGAAAGGTGGTGGCTTTAGTGGGTAGTAGTGGGTGTGGGAAGAGCACTGTCATCTCCCTAGTTGCGAGATTCTATGATCCATCACAAGGTGAGATTCTCATTGACAACTACAACATTAAGGATCTAGACTTGAAGTTCCTCCGAAAGAACATAGGAGCAGTATTTCAAGAGCCATCGCTCTTTTCTGGCACCATCAAGGATAACATTAAAGTAGGAAGCATGGAAGCAGATGATCAAGAAGTCCAGAATGTAGCATTGATGGCAAATGCACACTCTTTCATAACCCAACTCCCAGATCAGTACTCAACAGAGGTAGGAGAAAGAGGAGTGCAATTATCAGGTGGACAAAAACAGAGAATAGCAATAGCAAGAGCCATTATAAAGAATCCTCCAATTCTTTTACTTGATGAGGCCACAAGTGCACTTGATTCAGAGTCAGAGAAGCTGGTTCAAGCTGCTATTGAGAAAGCTATGCAGGGGAGAACAGTCATCTTGATTGCACACAGGATGTCAACTGTGATTAATGCAGATATGATTGCAGTCATAGAGAATGGCCAAGTTAAAGAGACGGGAACACACAGCGACTTGCTAGATACCAGCAATTTCTATAATAATTTATTTAACATGCAGAACCTCTGTCCAGACCAAGGCTCAAGAGTTACAGATCTTACTGAAGAAAATGCAAGTACAGACCAAGAGATTTCATTTCAAGACCTGGACCAATCTGAGGAACCCAACAAACATCCTAGAGATGCTTTGAAGGAAGAGGAACAGAGGGAAGACGCAAAGCAACGAGTTGGATTGTATTCAATCCTCTTCTCTCTAATAGGGCTGCTTTCATTATTCACTCACACCTTGCAGCATTACTTCTTTGGAGTAATTGGAGAGAAGGCCATGACTAACCTTAGACAAGCCCTGTATTCAGGCATACTAAACAATGAATTAGCGTGGTTCGAGAAACCTGAGAATAATGTTGGCTCACTTACCTCACGGATCATCAATGATACCTCAACGGTCAAAACCATAATCTCGGATCGTATGTCTGTTATCGTCCAATGTATCTCCTCCATACTGATTGCAACAATAGTAACCATGAAACTTAACTGGAGAATGGGTCTTGTAGCTTGGGCTGTGATGCCTTGCCACTTCATTGGTGGCCTGATTCAAGCCAAGTTTGCCAAAGGATTTTCAAGTGGCTCTGCTGCTGCACATTGTGAACTTGTTGCCCTTGCTTCTGAATCTGCAACCAACATGAAAACAATTGCCTCATTTTGTCATGAAGATTTCATACTTGACAAAGCCAAAATTGCTTTGGAACCTCCAATGAGAAAGAGCAGGAGAGCAAGCATCAAGTATGGGATCATTCAAGGCTTCTCACTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTATACAGCAGTTTTGGTGGAAAGAGATCAAGCTACTTTTGAGAATGGTATAAGATCGTACCAGATTTTCTCCCTCACTGTGCCTTCAATCACAGAACTGTGGACACTGATCCCCACAGTCATCTCCGCCATCAGTATTCTAACTCCTACATTCAAAACCCTTGACCGGAAAACTGAAATTGAACCGGATACACCAGAGAATTCACATGCTGAGAAGATCAAAGGGCGAATCGAATTTCAAAATGTTAGTTTTAATTACCCACTAAGACCAGAAGTGACTGTTCTCAACAACTTCTGCTTACAAATTGAAGCTGGATCAAAAGTGGCTCTTGTGGGGCCAAGTGGAGCCGGAAAATCCTCAGTTTTGGCCCTTATACTGAGATTCTATGATCCTAGGGCAGGAAGGATACTGATTGACAGAAAGGATATAAGGAATTACAATCTAAGAAGATTGAGGTCACGGATAGGATTGGTACAGCAAGAGCCTCTGCTTTTCAGCTCCTCAATCAGAGATAACATCTGCTATGGGAATGATGGAGCTTCTGAAACTGAAATTATAGAGGTAGCAAGGGAAGCACGGATACATGAGTTCATAAGTAATTTGTCTCATGGATATGATACAGTTGTGGGGCAGAAGGGCTGCCAACTTTCTGGAGGACAAAAGCAGAGAATAGCCATTGCTAGAACTCTACTAAAGAGGCCAGCAATTTTACTCCTGGATGAAGCAACAAGTGCCCTTGATACTCAGCTTTCCACGGTGATCAACTCAGATACCATAATAGTTATGGACAAAGGTGAGATTGTGGAGATGGGTCCTCACTCAACCCTGATAGCAGTATCTGATGGGCTTTACTCCAAATTGGTCCAGCTCCAGAGTTTGGGAGAGAATTAA 3474 43.72 MDVKKKKKTEGDGDTAMGEEALPFHKLLSYADGLDWVLMALGTLGSIVHGLAQPVGYLLLGKALDAYGTNIKDPEAMVDALYKVVPYVWYMAAAMFPAGILEVGCWMHASERQVSRLRLAFLRAALNQEIGAFDTDLTSGKIISGISSHMSIIQDAIGEKLGHFLSNIATCFSGILIAAICCWEVSLLTLLVVPLVLVTGATYSKKMNAISAAKMHFLSEATSMIEQTLSQIKTVFAFVGESTAAKSFSECMDKQFRISKREAIIKGVGTGLFQTVTTCCWALIIWVGAIVVTAKRSSGGDIIAAVMSILFGAISLTYAAPDIQIFNSAKAAGNEVFQVIKRKPAISYDSEGKTLEKINGNIDMQDVYFTYPSRKERLILDGFSFSIPAGKVVALVGSSGCGKSTVISLVARFYDPSQGEILIDNYNIKDLDLKFLRKNIGAVFQEPSLFSGTIKDNIKVGSMEADDQEVQNVALMANAHSFITQLPDQYSTEVGERGVQLSGGQKQRIAIARAIIKNPPILLLDEATSALDSESEKLVQAAIEKAMQGRTVILIAHRMSTVINADMIAVIENGQVKETGTHSDLLDTSNFYNNLFNMQNLCPDQGSRVTDLTEENASTDQEISFQDLDQSEEPNKHPRDALKEEEQREDAKQRVGLYSILFSLIGLLSLFTHTLQHYFFGVIGEKAMTNLRQALYSGILNNELAWFEKPENNVGSLTSRIINDTSTVKTIISDRMSVIVQCISSILIATIVTMKLNWRMGLVAWAVMPCHFIGGLIQAKFAKGFSSGSAAAHCELVALASESATNMKTIASFCHEDFILDKAKIALEPPMRKSRRASIKYGIIQGFSLCLWNIAHAVALWYTAVLVERDQATFENGIRSYQIFSLTVPSITELWTLIPTVISAISILTPTFKTLDRKTEIEPDTPENSHAEKIKGRIEFQNVSFNYPLRPEVTVLNNFCLQIEAGSKVALVGPSGAGKSSVLALILRFYDPRAGRILIDRKDIRNYNLRRLRSRIGLVQQEPLLFSSSIRDNICYGNDGASETEIIEVAREARIHEFISNLSHGYDTVVGQKGCQLSGGQKQRIAIARTLLKRPAILLLDEATSALDTQLSTVINSDTIIVMDKGEIVEMGPHSTLIAVSDGLYSKLVQLQSLGEN* 1158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21004456 21010493 + Vvi16g928 Vvi16g928 778577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g928 1157 SUPERFAMILY ABC transporter transmembrane region 25 344 IPR036640 GO:0005524|GO:0016021
Vvi16g928 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 599 IPR027417 -
Vvi16g928 1157 Gene3D ABC transporter type 1, transmembrane domain 26 899 IPR036640 GO:0005524|GO:0016021
Vvi16g928 1157 Pfam ABC transporter transmembrane region 650 882 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g928 1157 Pfam ABC transporter transmembrane region 40 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g928 1157 Coils Coil 524 544 - -
Vvi16g928 1157 Pfam ABC transporter 956 1105 IPR003439 GO:0005524
Vvi16g928 1157 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Vvi16g928 1157 ProSitePatterns ABC transporters family signature. 1077 1091 IPR017871 GO:0005524
Vvi16g928 1157 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g928 1157 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 651 903 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g928 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 930 1152 IPR027417 -
Vvi16g928 1157 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Vvi16g928 1157 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 938 1150 IPR003439 GO:0005524
Vvi16g928 1157 SUPERFAMILY ABC transporter transmembrane region 652 923 IPR036640 GO:0005524|GO:0016021
Vvi16g928 1157 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Vvi16g928 1157 MobiDBLite consensus disorder prediction 629 648 - -
Vvi16g928 1157 Gene3D - 352 600 IPR027417 -
Vvi16g928 1157 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Vvi16g928 1157 SMART AAA_5 389 575 IPR003593 -
Vvi16g928 1157 SMART AAA_5 965 1144 IPR003593 -
Vvi16g928 1157 PANTHER BRACHYTIC2 6 624 - -
Vvi16g928 1157 PANTHER BRACHYTIC2 651 1154 - -
Vvi16g928 1157 CDD ABC_6TM_Pgp_ABCB1_D2_like 649 921 - -
Vvi16g928 1157 CDD ABC_MTABC3_MDL1_MDL2 362 599 - -
Vvi16g928 1157 MobiDBLite consensus disorder prediction 619 648 - -
Vvi16g928 1157 PANTHER ABC TRANSPORTER B FAMILY 6 624 - -
Vvi16g928 1157 PANTHER ABC TRANSPORTER B FAMILY 651 1154 - -
Vvi16g928 1157 Gene3D - 928 1156 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g928 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100255500 2145.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g928 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004410 1 4 1 0 1 2 1 2 2 2 1 2 1 2 2 1 2 1 1 2 1 1 1 1 1 2 2 1 1 1 43