Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g929 ATGCGTTCATCGCCTTGCCCTTTCTGTCGTCTCACGTTCCCCGCCTCTCAACTTCAGAGGCATGCGAATGATCACTTGGAGGAGGAGGAACTCAGAAGGGACATGGAGTTTGCCCAGGAAATTGCTATTGCCCCAACTAGCCCACCCAAAACCCTGAATAATCCAGTGGAGCATGGCATGTTATTTGAAACAAGCTCTAGAAAAACTTATGAAAGAAGCAGCTCAAGGTCTGATGAGAGTAGTAATTGCAGTGGAGAAATGTCCATTGATGAAAAGGTTTTTCACTTAGCTCGTTTACAAATTAGGAGCACCTTCTACAGAGTTGAAGATGGTTTGATGGCCTTGTTGAGAAACTGCTTGGAATCAGAACTAGGAAACTCAACCTGTATATTGTCTGGCTCTGTTATTCATTTTCAAAGCATTGAATCAGAGGATGTTGGGTGGGGTTGTGGTTGGCGTAATATCCAAATGCTCAGCTCTCACTTGGTTATGCAAAGACAAGAAGCAAGGCAAGTTTTGTTTGGTGGTTCAGGATTCATTCCTGATATACCATCACTCCAAAGATGGCTTGAGATTGCTTGGGAAAGAGATTTCGATACAGTTGGCTCGGAGCATTTCAATCACAAAATATATGGCACAACAAATTGGATTGGAACCACTGAATGTGCTGCACTATTTCGTTCTTTTGGTCTGCGGGCAAGGATAGTGGATTTTGGTCCTAAGGAAATTAAATCACCATATCCTCAAAAAAATAGTTCCAGCAGGCATGATTCGTGTAACTTGGCAGACAGTACAGAGTCTGATAAATGTTTCACAAGGAATGATAAAGGTCGTCAAGTTCTTGTTGATTGGGTATGGAATTATTTCTCTGACAATAAGTTCGCCAAATCAGGCAGCAATGATGTTATTGTCACTGACAAAGCGCCCTTGTACTTTCAGCATGATGGCCATTCGAGAACCATCGTTGGAATTCAAGTCAAACATCAGCTCAATGGGATGCATCAATACAACCTATTAATTTTGGACCCTACTCATAAAACAGCAGCTCTGGAAAGATCACTTAAAGAAAATGTTGGATGGCAGAAGTTTATTAAAAGAGGGGTTCACACACTGAAAAAGCTGCAATACCAGTTATGTCATATTGATCCTGGCATTGCCCATGCTGAGGAGTTGGAGCAGCTCAAGACCTTGGACAGCATTTTTCTTGAATTCTAG 1215 42.06 MRSSPCPFCRLTFPASQLQRHANDHLEEEELRRDMEFAQEIAIAPTSPPKTLNNPVEHGMLFETSSRKTYERSSSRSDESSNCSGEMSIDEKVFHLARLQIRSTFYRVEDGLMALLRNCLESELGNSTCILSGSVIHFQSIESEDVGWGCGWRNIQMLSSHLVMQRQEARQVLFGGSGFIPDIPSLQRWLEIAWERDFDTVGSEHFNHKIYGTTNWIGTTECAALFRSFGLRARIVDFGPKEIKSPYPQKNSSSRHDSCNLADSTESDKCFTRNDKGRQVLVDWVWNYFSDNKFAKSGSNDVIVTDKAPLYFQHDGHSRTIVGIQVKHQLNGMHQYNLLILDPTHKTAALERSLKENVGWQKFIKRGVHTLKKLQYQLCHIDPGIAHAEELEQLKTLDSIFLEF* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21010766 21014022 - Vvi16g929 Vvi16g929 778578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g929 404 Pfam Peptidase family C78 127 379 IPR012462 -
Vvi16g929 404 Gene3D - 116 385 - -
Vvi16g929 404 PANTHER PEPTIDASE C78, UBIQUITIN MODIFIER-SPECIFIC PEPTIDASE 1/ 2-RELATED 4 404 - -
Vvi16g929 404 PANTHER ZINC FINGER PROTEIN 4 404 - -
Vvi16g929 404 MobiDBLite consensus disorder prediction 63 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g929 K24134 ZUP1, ZUFSP; zinc finger-containing ubiquitin peptidase 1 [EC:3.4.19.12] - vvi:100250322 813.142
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g929 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1047 Cone5ag0757 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .