Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g930 ATGCCATATGATCTTCCGACTCAACCTCTTGATATATATGGTCATGGGTATCAACTTTCACCTCCATTTTCGCCATCACAGTCCCCATCTCCCCCGACATACTTTTCCAGTAGTAACCCTATGTATTCTCGTTTCTCTTCAGAAACTGCTCCTGTAACTATCCCACTTCCATTGGTGGGCAGAGGCTCTAGGTACCTTTCGCCAAATTCATCTGATCCTAGTAGACATTCTCTTCCACCTCTGTCTCCCAGGAGCACAAGGCATGATCCTTCATCACAGGAGTCTCCATCGGGAAATAGGTCATTTAGAAAAACAGAAGGTTTAAGGATAGGAGAGTACTCTGGGACAACAAATAATTATTCTGGTCAGAAGGTATTGAAAGATAGCAAAGATGATTCAGGGCGGTTCTCAGGGTTGCTATCTTCCAGTGGCTCACCACGTATTGGCTTTTCAAGATGCTCTAGCAGATTATCTTTCCAGGATGACTTGGATGATTGTGACTTCTCTGGTCCTTTTGATGTGGATGATGTTGATACAACAGATTCCCATGCCAGTCAGAACCTTGATGGGAAAAGAGCCTCAGAGTTTCCTTCACTGGCATTTCCAATGACTGGAAAATCACCAGATGCTGCTGTTGGTGTTCTTGTTAACATGCTAAGGAGGGCGCCTCCTCTGCGCCAAGATCCAAGTTGTTGCTCATCCCACTCTTTGAAGACTGAACCCGAGGGAGAAGCGGGTGCAGCATCTGAATTTTTTATGGCTCGAAAGACAGCTGATGCACTGGAAGAGCTCAGGAGTTACAAAGAAATGAAAGACTTACTGCTCTCTAAGAGTGGAGCACATGTGGTTACTAGAGAAGAAACTTAA 867 44.98 MPYDLPTQPLDIYGHGYQLSPPFSPSQSPSPPTYFSSSNPMYSRFSSETAPVTIPLPLVGRGSRYLSPNSSDPSRHSLPPLSPRSTRHDPSSQESPSGNRSFRKTEGLRIGEYSGTTNNYSGQKVLKDSKDDSGRFSGLLSSSGSPRIGFSRCSSRLSFQDDLDDCDFSGPFDVDDVDTTDSHASQNLDGKRASEFPSLAFPMTGKSPDAAVGVLVNMLRRAPPLRQDPSCCSSHSLKTEPEGEAGAASEFFMARKTADALEELRSYKEMKDLLLSKSGAHVVTREET* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21017272 21022887 - Vvi16g930 Vvi16g930 778579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g930 288 PANTHER UNCHARACTERIZED 6 284 IPR040182 GO:0000045
Vvi16g930 288 PANTHER AUTOPHAGY-RELATED PROTEIN 13A 6 284 - -
Vvi16g930 288 MobiDBLite consensus disorder prediction 1 143 - -
Vvi16g930 288 MobiDBLite consensus disorder prediction 30 50 - -
Vvi16g930 288 MobiDBLite consensus disorder prediction 64 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g930 K08331 ATG13; autophagy-related protein 13 - vvi:100245198 512.686
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1046 Cone5ag0756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .