Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g935 ATGCTATCCTGGAGCTTCACTTTGTTTCTCATTGCCATTTCTGTCTTATCCTCCCCATCATCTTGCACATTTACTATAACAAACAACTGCCCTCATACCATCTGGCCTGGCACACTGGCGGGTTCGGGTACGCCGCAGCTTCCTACCACTGGATTGCAATTGGAGTCTGGCCAGAGTATCAGAATTCCAACATCTCCAGGATGGTCGGGTCGAATCTGGGCGAGGACAGGTTGCACATTCGATGAGTCGGGAGCAGGCACTTGCCAGACTGGGGACTGTGGTGGGAGGCTGGAGTGTGATGGGATTGGGGCTGCTCCACCCACATCACTCTTTGAGATAACCCTAGGAGCAGGTACTGATAAAGATTTCTATGATGTTAGCTTTGTGGATGGATACAATCTCCCACTGATTGCTGTACCAAGAGGAGTTTATGGTGGCTGCAATGCTACAGGCTGTGCTTCAGACATCAACATAGGTTGTCCAAAAGAGCTTCAGGTGGTGGGGAATAGTGGAGAGGAAGGGGGGGTAGTTGCATGCAGGAGTGCTTGTGACGCATTTGGGCTGGACCAGTACTGCTGCAGTGGGGAGTTTGCAAATCCATCAACATGCCGCCCATCCTTCTATTCCAGCATCTTCAAGAGAGCTTGCCCCAGGGCTTACAGCTATGCTTTTGATGATGGCACAAGCACTTTTACATGCAAGGCTTATGAGTATGCCATCATCTTTTGTCCCAATGCCAATGGGATGAAGAGGTCGAGTGATCCACTTCCAGGTCCATTATTTCAAGGGCGGAACAATGGAGAGATCGCGGGGATGGTTTCCTCTTCAAACATCATCCTACCCTTTTCATTGTCAATCCTTCTCCTCCTCCTCCATTTACTATTATAA 888 49.44 MLSWSFTLFLIAISVLSSPSSCTFTITNNCPHTIWPGTLAGSGTPQLPTTGLQLESGQSIRIPTSPGWSGRIWARTGCTFDESGAGTCQTGDCGGRLECDGIGAAPPTSLFEITLGAGTDKDFYDVSFVDGYNLPLIAVPRGVYGGCNATGCASDINIGCPKELQVVGNSGEEGGVVACRSACDAFGLDQYCCSGEFANPSTCRPSFYSSIFKRACPRAYSYAFDDGTSTFTCKAYEYAIIFCPNANGMKRSSDPLPGPLFQGRNNGEIAGMVSSSNIILPFSLSILLLLLHLLL* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21050288 21051593 - Vvi16g935 Vvi16g935 778584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g935 295 PANTHER OS03G0233200 PROTEIN 5 260 IPR001938 -
Vvi16g935 295 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Vvi16g935 295 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Vvi16g935 295 PRINTS Pathogenesis-related protein signature 84 113 IPR001938 -
Vvi16g935 295 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vvi16g935 295 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Vvi16g935 295 SMART tha2 24 244 IPR001938 -
Vvi16g935 295 Gene3D Thaumatin 22 244 IPR037176 -
Vvi16g935 295 CDD TLP-PA 23 243 - -
Vvi16g935 295 Pfam Thaumatin family 28 244 IPR001938 -
Vvi16g935 295 PIRSF PR5 1 277 IPR001938 -
Vvi16g935 295 PANTHER THAUMATIN-LIKE PROTEIN 1B 5 260 - -
Vvi16g935 295 SUPERFAMILY Osmotin, thaumatin-like protein 23 245 IPR037176 -
Vvi16g935 295 ProSitePatterns Thaumatin family signature. 84 99 IPR017949 -
Vvi16g935 295 ProSiteProfiles Thaumatin family profile. 21 246 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g935 - - - vvi:100246972 578.17
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g935 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013232 1 1 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27