Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g938 ATGATCGTCTCAGTAGCTTCAACCCCAGAACGATTCAAGAATGGAGGCATCCTGAAACAGTCTCAGAAACCTTCAGTTCACCATCAAACTCTCAGGGTTTTGGAGTGGGACAAACTCTGCCACTCCGTTTCTTCCTTCGCTTCGACTTCCTTGGGCCGTGAATCCACCTGGGCCCAGCTCTGGTCCCTAGACCAGACCTACCAAGAGAGTTTGAGACTTTTGGATGAAACCAATGCTGCTCTGGAAATCCATAAGCATGGTGGTTGCACCATGGACTTCAGCACCATTGATGCTGTTCTGGTTAAATCTGCTATCCAGCATGCTCGTAGGATGTTACCAGTGGATGGAAATGAAGCCATGGCTGTTGTGGCTCTGCTACAGCTTGCAGAAACTTTGCAGCTTAATCTCAAAGCTGCCATCAAGGAAGATGCAGATTGGTACAAACGTTTCATGCCTATTTCAGAAGTGATAATGGGGTTGGTTATAAATAGATCATTAGTTAAATTGATACAGCAAGTAGTAGATGAAGATGGCTCTGTTAAAGACTCTGCGAGCTCTGCACTGAAGCAATCACGTGATCAAGTGCGGACACTTGAGAGAAAGTTATATCAGTTGATGGACAGCTTAGTTAGGAACAATGTGAATGAAACATCCTCTCTGGAAGTGAGTAATGTTGATGGAAGATGGTGCATAAAATCAGGGGCCAATCTTACAAATTTGAAGGGTTTATTGTTGTCCAGTGGTTCAGGTGTGGGAAGCATTATAGAGCCACTCTCTGCTATTCCATTAAATGATGAGTTGCAAAAGGCAAGGGCACTTGCGGCAAAGGCTGAGGCCGACGTACTTTTAAAGTTAACAGAGAAGATGCAAATGGATCTTGAAGACATTGAAAAGTTATTGGACAGTGTCATTCAACTGGATGTGATCAATGCTCGAGCTACCTATGGCCTTTCATTTGGAGGCACTTGTCCTGATTTATTTTTAGCAGAAAACAAGAATGGATCTTCCACAGGAGCCCACTTATCAGGGCATGGAACTTCAGAAGCATCTTATCCGATTAAGAGGGAATGGACTTTGCATCTGCCAAAAGCTTATCATCCTCTATTAGTTCAACAGCATCGAGAAAATCTTCAGAAGGCCAGGAAGGATGTTAGCCTTGCTATTTCTGAACAAAGGAGGAAAAAACTGCAAGGGGAGAAATTTAATGTTAAAGAAGAAACAGATATAAATCTTTCATCTTTGGAAATGCAGGTAACTAGATTAGAACAATCTCCTCCAGTCCCTGTTGATTTTTTTATCGCTCAAAGAACCAGAGTGTTGGTTATAACTGGTCCAAATACAGGGGGCAAAACCATTTGCTTAAAGACAGTTGGACTAGCTGCCATGATGGCAAGATCAGGCCTTCATGTTTTAGCTGCTGAACCTGTACGAATCCCTTGGTTTGATTATGTTTTTGCTGATATCGGTGATGAGCAGTCACTATCCCAATCTTTGTCTACCTTCTCTGGCCATTTGAAACAAATTAGTGACATTAAAGCACAGTCAACAAATCAGTCATTGGTGCTACTAGATGAAGTTGGTGCAGGCACAAATCCCCTAGAAGGAGCGGCTCTAGGGATGTCATTGCTGGAGTCTTTTGCTGAAACTGGTGCCTTGTTGACAATAGCTACCACACATCACAGTGAACTCAAAACCCTCAAATACAGTAACGACGCCTTCGAAAATGCATGTATGGAGTTTGATGAAGTGAACTTAAAACCAACTTATAAGATCCTCTGGGGCATTCCAGGACGTTCAAATGCAATCAATATTGCTGAAAGGTTAGGAGTACCCAAGAAAGTTCTAGATAAAGCTCGCGAACAGTATGGAGCAGCTAGCGCCGAGATTAATGAGGTCATAATTGATATGGAAAGGTTCAAGCAAGAATTTCAAGAGCGTGTTAATGATGCACGATATTATCTGATGCTTTCAAGAGATCTTTATGAAAATCTATTGGTGACTAAAAGAAAGCTAATGGAACATGGCACCAATCAAAGATATGGAAAGATGAGGGAAGTATCTGAGGCTGCAGCAGTGGCACGGTCTCTCCTTCACAAGAAGGTCCGACAGCTTCGTTCATCTGCAACCCGACCTTCCCAGCCTACTGCTGCAGATAAAAGCCAACATGCATCAGCAACTAGCAACCAACATACTGCAGCAGATATCAATGAACGTCCTACTACAAGTGAGAGTAAACACCCCGCTAAAGTTGCCCAGCAATCATCATCAGAGAAGAAAAGAGTTCCCAAAGTTGGCGATATGGTGCATGTTTCTTCCCTAGGAAAGAAAGCAACAGTTTTAGAAGTGGAGTCATCTAAAGGGCAGCTCGTCGTTCAGGCTGGTAACATGAAGTTGAAATTAAAATTGACTGATGTCGAAACCTGA 2424 42.9 MIVSVASTPERFKNGGILKQSQKPSVHHQTLRVLEWDKLCHSVSSFASTSLGRESTWAQLWSLDQTYQESLRLLDETNAALEIHKHGGCTMDFSTIDAVLVKSAIQHARRMLPVDGNEAMAVVALLQLAETLQLNLKAAIKEDADWYKRFMPISEVIMGLVINRSLVKLIQQVVDEDGSVKDSASSALKQSRDQVRTLERKLYQLMDSLVRNNVNETSSLEVSNVDGRWCIKSGANLTNLKGLLLSSGSGVGSIIEPLSAIPLNDELQKARALAAKAEADVLLKLTEKMQMDLEDIEKLLDSVIQLDVINARATYGLSFGGTCPDLFLAENKNGSSTGAHLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKARKDVSLAISEQRRKKLQGEKFNVKEETDINLSSLEMQVTRLEQSPPVPVDFFIAQRTRVLVITGPNTGGKTICLKTVGLAAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLSTFSGHLKQISDIKAQSTNQSLVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHHSELKTLKYSNDAFENACMEFDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQYGAASAEINEVIIDMERFKQEFQERVNDARYYLMLSRDLYENLLVTKRKLMEHGTNQRYGKMREVSEAAAVARSLLHKKVRQLRSSATRPSQPTAADKSQHASATSNQHTAADINERPTTSESKHPAKVAQQSSSEKKRVPKVGDMVHVSSLGKKATVLEVESSKGQLVVQAGNMKLKLKLTDVET* 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21066285 21076136 - Vvi16g938 Vvi16g938 778587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g938 807 Coils Coil 181 208 - -
Vvi16g938 807 ProSitePatterns DNA mismatch repair proteins mutS family signature. 519 535 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g938 807 SMART mutATP5 437 623 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g938 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 623 IPR027417 -
Vvi16g938 807 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 19 804 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Vvi16g938 807 PIRSF MutS_YshD 23 807 IPR005747 GO:0004519|GO:0016887|GO:0030983|GO:0045910
Vvi16g938 807 MobiDBLite consensus disorder prediction 706 738 - -
Vvi16g938 807 SUPERFAMILY DNA repair protein MutS, domain III 160 318 IPR036187 -
Vvi16g938 807 SMART DNAend 34 372 IPR007696 GO:0005524|GO:0006298|GO:0030983
Vvi16g938 807 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS, TYPE 2 19 804 - -
Vvi16g938 807 Pfam MutS domain V 440 621 IPR000432 GO:0005524|GO:0006298|GO:0030983
Vvi16g938 807 Coils Coil 370 394 - -
Vvi16g938 807 Coils Coil 404 424 - -
Vvi16g938 807 Pfam MutS2 and Smr-associated SH3 domain 764 805 IPR046893 -
Vvi16g938 807 MobiDBLite consensus disorder prediction 702 765 - -
Vvi16g938 807 Gene3D - 401 690 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g938 - - - vvi:100241843 1428.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g938 . . . . . . . . . . . . . . . . Cpe14g00004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00003 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002296 1 19 1 1 1 1 1 2 2 1 1 1 1 0 3 1 2 2 1 2 1 1 1 3 4 3 1 1 3 1 63