Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g942 ATGATTGCAATAATGCAAGGCAAAATCATGACAAGAAGACTCAAATCAAGTCCCTTTCGGTTTCGGTTCACCATCAATAAAGAAGAGAGAGATGATAATCCGTGTGAAGAAAAATACCAGATGACCAAGGCAACGAGCCTAAAGGGGGGGAGGACATGGACATCAAATTCTAGTAGTGGTCTGGGTAGCAGTGGCTTTGCCTTCATCATTGTCCCGGATGAGTTCACTGTGGGAAGGCCGGGCCCGTGGCTGGCCATGCTCAACGACGCCTGTGACGATGACTACAAATCTGTTGCGATCGAGTTTGATACACACAAGAATCCAGAGTTTGGAGACCCCAACGACAACCATGTGGGCATTAATCTGGGTACCATTGTTTCCACCACAACCAGAATTGTCTCTCTCAAAGACGGTTCAATGCACCAGGCTTGGATTAGCTACGATGGCCTCCATAGATGGATGGACCTCCGACTAGGATCAGACAATAGTGGTTATCCATCACAACCCATCTTCTCAGGGCCCCTGGATATCTCACCTTATCTGAAAGAGTATATGTTTGTGGGGTTCTCTGCTTCTACGGGTAACCACACCCAAATTCACAACATACTCTCCTGGAATTTCACATCAACCAGTCAAGCTTCTCTTCTAGTCCCTTCAACTGAAACGTGTGAGAGTAAGGTCATCGTTAACGGTGGTCAGAGTACCAATAGCTCTAAGACAAAGGCTCCAAGTAGTTTCCTGATCTTCCTTGCTGTGGTTGTTCTGGGTCTAGCTGTTCTGCTCAATCTCTACTACAACGGTAAACGCAGACACAAAGAACCATCCGTGGTATTGCTCTCTGAGAAAAAGCAGCGACCACAGCCACCTAACAAGCCTCGCCGCTTCACCATTTCTGAGATTTCCTCAGCGACTCGGTGTTTTAGTGACTCGCAAGAGCTGGGTAGTGACTCGAGAGGCACTTTCTATAAAGGAACGCTTCTGAATGGTTCCCACGTGGCTGTGAAGCGATTCTCAGCTCAGTTTTTGAGCTCACAGGGATTGGATAGACGGAGAATCATGAAGGAAATTGGAGCTGTGAGCCGGGTTCGTCACCCAAACTTGGTCCCAATCAGAGGATGGTGTAAAGATAACAGAGAAACTATGGTTGTGTATGATTATCTTCCCAATGGAAGCCTTGACAAGTGGCTATTCGGAGCTGGTGTTCTTCCTTGGACCAGGCGATTCAAGGTGGTAAAAGATGTTGCAGACGGGCTAAGTTTCATCCACTCTAAACAACTAGCTCACAAGAACATGAAGACAAGCAGCGTATTCCTTGACATTAGTTTTCGAGCCATGCTAGGTGATTTTGGATTGGTACTCTCTGCATCAGACTCCAAGAGATTTGAAGCAGCAGTGAGCCAGAAAGCTGATGTGTTTGATTTTGGGGTCTTTGCATTGGAAGTGGTTGCTGGGAGGAGGAGAATGGAGCCAGAGGCAGGTGATGAGCAGAAGGATTTGTTAGATTTTGCGTGGAGAATGCATGAAAAGGATGAGAGGGTGAGGGTGGTGGATAGGAGGATGGGCTCAGTGATCAACTTGGAACAAGCCATTCTAGTATTGGAGATTGGGTTGCTCTGTACATTAAATGAGACCAAGGGACGACCTTCTATGGAGGAAGTGGTGGGATTTTTGGCCATGGACAGACCAGTACCTCAGTTGCCGCCTTGTCGACCCATCTCCTTGTTCCCCTACAGCAGCACCACTGGTCTGTGCAGTGGAAATCCCTGCTCTCTTTTCAACAGATTCCTCCTCCAACAATTCTATTTTTTCATCCCAATCTGA 1821 47.28 MIAIMQGKIMTRRLKSSPFRFRFTINKEERDDNPCEEKYQMTKATSLKGGRTWTSNSSSGLGSSGFAFIIVPDEFTVGRPGPWLAMLNDACDDDYKSVAIEFDTHKNPEFGDPNDNHVGINLGTIVSTTTRIVSLKDGSMHQAWISYDGLHRWMDLRLGSDNSGYPSQPIFSGPLDISPYLKEYMFVGFSASTGNHTQIHNILSWNFTSTSQASLLVPSTETCESKVIVNGGQSTNSSKTKAPSSFLIFLAVVVLGLAVLLNLYYNGKRRHKEPSVVLLSEKKQRPQPPNKPRRFTISEISSATRCFSDSQELGSDSRGTFYKGTLLNGSHVAVKRFSAQFLSSQGLDRRRIMKEIGAVSRVRHPNLVPIRGWCKDNRETMVVYDYLPNGSLDKWLFGAGVLPWTRRFKVVKDVADGLSFIHSKQLAHKNMKTSSVFLDISFRAMLGDFGLVLSASDSKRFEAAVSQKADVFDFGVFALEVVAGRRRMEPEAGDEQKDLLDFAWRMHEKDERVRVVDRRMGSVINLEQAILVLEIGLLCTLNETKGRPSMEEVVGFLAMDRPVPQLPPCRPISLFPYSSTTGLCSGNPCSLFNRFLLQQFYFFIPI* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21086510 21089370 - Vvi16g942 Vvi16g942 778591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g942 606 SUPERFAMILY Protein kinase-like (PK-like) 286 557 IPR011009 -
Vvi16g942 606 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2-LIKE 58 574 - -
Vvi16g942 606 Gene3D Phosphorylase Kinase; domain 1 269 386 - -
Vvi16g942 606 Gene3D - 9 222 - -
Vvi16g942 606 CDD lectin_legume_LecRK_Arcelin_ConA 66 210 IPR001220 GO:0030246
Vvi16g942 606 Gene3D Transferase(Phosphotransferase) domain 1 387 562 - -
Vvi16g942 606 SUPERFAMILY Concanavalin A-like lectins/glucanases 56 211 IPR013320 -
Vvi16g942 606 PANTHER - 58 574 - -
Vvi16g942 606 Pfam Legume lectin domain 57 214 IPR001220 GO:0030246
Vvi16g942 606 Pfam Protein tyrosine and serine/threonine kinase 310 463 IPR001245 GO:0004672|GO:0006468
Vvi16g942 606 ProSiteProfiles Protein kinase domain profile. 307 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g942 - - - vvi:100248709 1042.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g01204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030370 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76294 PF07714 PK_Tyr_Ser-Thr 2.20E-21 CL0016 Vvi PK