Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g947 ATGGATGCTCTCCCTCTGCAGGAGCTTGTTGAGTGGGAGCATAAGAGCAAGATTGATGGGAAAATGCATGGGTGCGGACACGATGCCCACACCACTATGCTGCTGGGGGCTGCCAAGTTGCTTAGTCAACGGAAGCATAAACTTAAGGGAACTGTGAGACTTCTTTTCCAGCCAGCTGAGGAGGGAGGATTGGGCGCTCGTGAAATGATCAAGGTGGGTGCTCTTGGTGATGCTGAAGTGATATTTGGAATGCATATTGATCATGAAACACCCACAGGCAGTATAGCGTCTCGTTCAGGACCTTTCCTAGCTGCAGTGTGCTCCTTTGAAGCAAGAATAGAAGGGAAAGGTGGGGATGCTGCAGAACCCCACACTAATGCAGATCCAATACTTGCAGCATCATTTTCAATTTTGGCATTGCAACAGCTCATCTCAAGAGAATTAGATCCCCTGGACAGCCAAGTGCTGTCTGTTACTACTGTCAAAGGAGGGACAACACTGAATCTAACTCCATCACATGTTGTGCTTCGAGGAAGCTTAAGGAGTCTTACCACTGAAGGTTTGAAACAACTCCGGAAGAGAGTGAAAGAGGTTATTGAAGGGCAGGCAGCTGTACACCGATGTAATGCGTACTTTGACAGAACAGAAGATTACCTTCTTCCTGCAGTTGTGAATGACGAGGTCATGCATCAGCATGTGATGAGGGTTGGGAAACTCGTGCTTGGTCCTGAGAATATCCTCATAGCTAACAAGGTGATGGCAAGTGAGGACTTTGCCTTCTATCAAGAGGTGATTCCTGGAGTCATGTTTAGCATTGGAATTAGAAATGAGCTGGTGGGTTCTGTTCACTCCCCCCACTCCCCTCACTTCTTTCTTGACGAGGATCCAAGAAAGGCAGAGTGGTTAGTCTCAATAAGGAGGAAAATCCATGAAAACCCAGAGCTCAAATTCGAAGAATACAATACCAGTGCTCTTATTCGTGGAGAACTCGACAAACTGGGCATCTCCTACACACACCCACTTGCCAAGACTGGCATTGTAGCAGAAATTGGCACTGGGTCTGGCCCAGTTGTGGCTCTTCGAGCTGACATGGATGCTCTCCCTCTGCAGGAGCTTGTTGAGTGGGAGCATAAGAGCAAGATTGATGGGAAAATGCATGGGTGCGGCCACGATGCCCACACCACTATGCTGCTCGGTGCTGCCAAGTTGCTTAATAAAAGGAAGCATAAACTTAAGGGAACTGTGAGATTTCTTTTCCAGCCAGCTGAGGAGGGAGGTTTGGGCGCTCTTGAAATGATCAAGGAAGGTGCTCTTGGTGATGCTGAAGCTATATCTTGA 1338 47.98 MDALPLQELVEWEHKSKIDGKMHGCGHDAHTTMLLGAAKLLSQRKHKLKGTVRLLFQPAEEGGLGAREMIKVGALGDAEVIFGMHIDHETPTGSIASRSGPFLAAVCSFEARIEGKGGDAAEPHTNADPILAASFSILALQQLISRELDPLDSQVLSVTTVKGGTTLNLTPSHVVLRGSLRSLTTEGLKQLRKRVKEVIEGQAAVHRCNAYFDRTEDYLLPAVVNDEVMHQHVMRVGKLVLGPENILIANKVMASEDFAFYQEVIPGVMFSIGIRNELVGSVHSPHSPHFFLDEDPRKAEWLVSIRRKIHENPELKFEEYNTSALIRGELDKLGISYTHPLAKTGIVAEIGTGSGPVVALRADMDALPLQELVEWEHKSKIDGKMHGCGHDAHTTMLLGAAKLLNKRKHKLKGTVRFLFQPAEEGGLGALEMIKEGALGDAEAIS* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21116338 21124894 + Vvi16g947 Vvi16g947 778596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g947 445 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 3 1 296 - -
Vvi16g947 445 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 3 298 444 - -
Vvi16g947 445 Pfam Peptidase dimerisation domain 107 203 IPR011650 -
Vvi16g947 445 Gene3D Zn peptidases 1 295 - -
Vvi16g947 445 TIGRFAM amidohydrolases: amidohydrolase 1 295 IPR017439 GO:0016787
Vvi16g947 445 TIGRFAM amidohydrolases: amidohydrolase 302 444 IPR017439 GO:0016787
Vvi16g947 445 PANTHER PEPTIDASE M20 FAMILY MEMBER 298 444 IPR017439 GO:0016787
Vvi16g947 445 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 296 IPR017439 GO:0016787
Vvi16g947 445 Gene3D - 104 218 - -
Vvi16g947 445 SUPERFAMILY Zn-dependent exopeptidases 299 443 - -
Vvi16g947 445 Pfam Peptidase family M20/M25/M40 1 296 IPR002933 GO:0016787
Vvi16g947 445 Pfam Peptidase family M20/M25/M40 359 440 IPR002933 GO:0016787
Vvi16g947 445 SUPERFAMILY Bacterial exopeptidase dimerisation domain 107 212 IPR036264 -
Vvi16g947 445 Gene3D Zn peptidases 296 445 - -
Vvi16g947 445 SUPERFAMILY Zn-dependent exopeptidases 1 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g947 K14664 ILR1; IAA-amino acid hydrolase [EC:3.5.1.-] - vvi:100246990 587.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g947 . . Bda05g00152 Bda07g01963 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1032 Cone5ag0740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023690 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 3