Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g949 ATGGGTGAAGAAGCTAAGGAACAAGCTCCAGCTGAAGTTAAACCAGAGGCAGAGGAGAAGAAGGAGGAAAAAGCAGAGGAGAAGAAAGAAGAAAAACCAGAAGAGCCGAAGGAGGAACCTAAGCCACCATTACCATTTGTCTTGTTTGTAGATTTGCATTGTGTGGGATGTGCCAAGAAGATAGAGAGGTCCCTCATGAAAATAAGAGGAGTCGAGGAGGTTATGATTGATATGGCTCAAAACCAGGTGACTATAAAGGGAATAGTTGAACCACAAGCTGTGTGCAATAGGATAATGAAGAAAACCAAGAGAAGAGCTAAAGTCTTATCCCCTCTGCCTGAAGCTGAGGGAGAGCCCATGCCAGAAGTTGTTAGTTCACAGGTTAGTGGATTAACAACTGTGGAACTCAATGTGAACATGCACTGTGAGGCCTGTGCTGCCCAACTCAAGAGAAAGATACTAAAAATGAGAGGAGTACAGACGGCGGAGACGGAGCTGAGTACCAGTAAAGTCACAGTTACTGGCACCATGGATGCAGACAGGCTTGTTGATTATGTATACAGACGCACCAAAAAACAAGCACGTATTGTTCCACAGCCTGAACCTGAGAAGCAGGAGGAAAACAAAGAGGAAGAGAAGGGTGGTGAAAACAAGGAAGAGGGTAAAGTTGGAGAGATCCCCATGGATGATGAAACAATGAAGAGGATGATGTACTACTATCAACCGCTCTATGTCATTGAGCGAATGCCACCTCCCCAACTCTTCAGTGATGAGAACCCCAATGCCTGTTGCATCTCATAA 801 45.19 MGEEAKEQAPAEVKPEAEEKKEEKAEEKKEEKPEEPKEEPKPPLPFVLFVDLHCVGCAKKIERSLMKIRGVEEVMIDMAQNQVTIKGIVEPQAVCNRIMKKTKRRAKVLSPLPEAEGEPMPEVVSSQVSGLTTVELNVNMHCEACAAQLKRKILKMRGVQTAETELSTSKVTVTGTMDADRLVDYVYRRTKKQARIVPQPEPEKQEENKEEEKGGENKEEGKVGEIPMDDETMKRMMYYYQPLYVIERMPPPQLFSDENPNACCIS* 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21130942 21133170 + Vvi16g949 Vvi16g949 778598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g949 266 Pfam Heavy-metal-associated domain 137 180 IPR006121 GO:0046872
Vvi16g949 266 Pfam Heavy-metal-associated domain 48 91 IPR006121 GO:0046872
Vvi16g949 266 ProSiteProfiles Heavy-metal-associated domain profile. 139 186 IPR006121 GO:0046872
Vvi16g949 266 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 210 266 IPR044258 GO:0046872
Vvi16g949 266 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 9 1 219 IPR044258 GO:0046872
Vvi16g949 266 ProSiteProfiles Heavy-metal-associated domain profile. 52 98 IPR006121 GO:0046872
Vvi16g949 266 SUPERFAMILY HMA, heavy metal-associated domain 47 100 IPR036163 GO:0046872
Vvi16g949 266 MobiDBLite consensus disorder prediction 1 41 - -
Vvi16g949 266 CDD HMA 135 175 IPR006121 GO:0046872
Vvi16g949 266 MobiDBLite consensus disorder prediction 1 42 - -
Vvi16g949 266 Gene3D - 45 107 - -
Vvi16g949 266 Gene3D - 129 196 - -
Vvi16g949 266 CDD HMA 52 107 IPR006121 GO:0046872
Vvi16g949 266 SUPERFAMILY HMA, heavy metal-associated domain 128 192 IPR036163 GO:0046872
Vvi16g949 266 MobiDBLite consensus disorder prediction 193 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g949 - - - vvi:100241862 376.326
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g949 . . . . . . . . Cmo16g00013 Cmo18g01380 . . . . . . Cpe14g00012 . . . . . . . . . . . . . . Cone1ag1031 Cone5ag0738 . . . . . . . . . . . . . . . . . Cma16g00012 Cma18g01346 Car16g00010 Car18g01258 Cpe09g00006 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013892 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 2 0 2 1 0 0 1 1 1 1 0 1 2 2 2 20