Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g952 ATGGAGATGGTGCTACCTCTAGTTTTGGTATTAGTATTTTCCCTGACCTCTCAGATTGAAGCTGAGCTTCAAGTGGGATTCTACAGAGACAAATGCAGAGCTGAATCAATTGTGAAGGACGAAGTTGAAAAGGCCTTCGACAGAGACAGGGGAATTGCTCCTGGTCTGTTGAGACTGCATTTTCATGATTGCTTTGTTAGGGGATGTGATGCATCCATCCTTGTAGACTCAACCCCAATGAATGTAGGCGAGAAGGATGGTCCACCCAATGTCAATACTCTCCGTGGGACCGAAGTGATCGACAGTGCCAAGGCTAGACTAGAAGCTGAATGTAAAGGAGTAGTCTCTTGTGCAGATACTCTTGCATTTGCAGCAAGAGATGCTGTAGAAATAAGCAACGGCTTTGGGTGGTCAGTTCCAGCAGGGAGGCGAGATGGAAGGGTGTCACTTGCTTCTGAGACTCTAGACATACCTGCTCCATTTCTTAACCTTGATCAACTCACCCAGTCCTTTGCTAAGAAGGGACTAACACAGGAAGAGATGGTCACGCTCTCCGGCGCTCACACAATTGGCCATGCTCATTGCACCTCATTCAGCAACAGACTATATGACTTCAATGCATCGTCTAGCCAAGACCCGAGTTTAAACCCCCTATATGCTGAGGATTTGAAGAGACAATGCCCAAGAGGTCCACAGGGAACTGTTGATCCTAACCTCGTTGTGGACATGAACTTCAGCCCAGCTGTGATGGACTCGAGCTATTACACAGATGTTCTTCATCACCGTGGCCTGTTCACGTCTGATCAGGCACTCACAACCAGCCAGGCTACTGCCAGGCAAGTGACCACATATGCAGTAAATAGGTTGCTTTGGGAGTCGGAGTTTGCTAAAGCAATGGTGAAGATGAGTCAAATTGAAGTACTAACAGGAACTGATGGAGAGATTCGAACCAACTGGAACCAATCATATCCATTTAAGATGGTTCTGACTTCTACTATAAATACCTATAACAATGTTATAGCCTATAAGCACAAAGAAGTAATGAGTTCGAAAAGGGTTACTTGGTTGTCTTTAACTTGGGTTCTGGTTTTCTTATGTCTAAGTGTTGAGTTGGAAGCTCAGCTTCAAGTGGGGTTCTATAGAACCTCATGTGGCTTGGCTGAATTCATAGTGAAAGATGAGGTTAGGAAAGGGTTCATTCGGGACAGTGGGGTGGCTCCTGGCCTGGTCAGAATGCACTTTCATGATTGTTTTGTTAGGGGTTGCGATGGGTCAGTGCTCATCGATTCGACTCCCTCAAACACAGCAGAAAAGGATTCTCCTGCTAACAACCCTAGTCTTAGAGGGTTTGAAGTCATTGATAGTGCAAAGGCTAGACTCGAAGCTGTGTGCAAGGGAGTGGTTTCATGTGCTGATATAGTTGCCTTTGCAGCAAGGGATAGCGTGGAGATAACCGGAGGGCTTGGCTATGATGTCCCTGCAGGAAGAAGAGATGGCAGAATTTCACTAGCTTCAGAGGCATCGACAAACTTACCACCCCCGACCTTTACTGTCGACCAACTCACTCAGTTCTTTTCAAACAAAGGATTGACACAGGATGAAATGGTGACTCTCAGTGGAGCACACACAATTGGCCGTTCGCATTGCAGTTCCTTCAGCAACAGGTTGTACAATTTCAATGGAACATCGGGCCAGGACCCTACTCTAGATCCCCAGTATACGTAG 1725 46.43 MEMVLPLVLVLVFSLTSQIEAELQVGFYRDKCRAESIVKDEVEKAFDRDRGIAPGLLRLHFHDCFVRGCDASILVDSTPMNVGEKDGPPNVNTLRGTEVIDSAKARLEAECKGVVSCADTLAFAARDAVEISNGFGWSVPAGRRDGRVSLASETLDIPAPFLNLDQLTQSFAKKGLTQEEMVTLSGAHTIGHAHCTSFSNRLYDFNASSSQDPSLNPLYAEDLKRQCPRGPQGTVDPNLVVDMNFSPAVMDSSYYTDVLHHRGLFTSDQALTTSQATARQVTTYAVNRLLWESEFAKAMVKMSQIEVLTGTDGEIRTNWNQSYPFKMVLTSTINTYNNVIAYKHKEVMSSKRVTWLSLTWVLVFLCLSVELEAQLQVGFYRTSCGLAEFIVKDEVRKGFIRDSGVAPGLVRMHFHDCFVRGCDGSVLIDSTPSNTAEKDSPANNPSLRGFEVIDSAKARLEAVCKGVVSCADIVAFAARDSVEITGGLGYDVPAGRRDGRISLASEASTNLPPPTFTVDQLTQFFSNKGLTQDEMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYT* 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21152034 21155500 + Vvi16g952 Vvi16g952 778601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g952 574 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 Gene3D Peroxidase, domain 2 523 574 - -
Vvi16g952 574 ProSiteProfiles Plant heme peroxidase family profile. 22 318 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 CDD secretory_peroxidase 374 573 IPR033905 GO:0004601|GO:0042744
Vvi16g952 574 ProSitePatterns Peroxidases proximal heme-ligand signature. 534 544 IPR019793 -
Vvi16g952 574 ProSitePatterns Peroxidases active site signature. 406 417 IPR019794 GO:0004601
Vvi16g952 574 Pfam Peroxidase 391 573 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 Pfam Peroxidase 38 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 SUPERFAMILY Heme-dependent peroxidases 23 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 ProSiteProfiles Plant heme peroxidase family profile. 374 574 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PANTHER PEROXIDASE 360 573 - -
Vvi16g952 574 PANTHER PEROXIDASE 9 318 - -
Vvi16g952 574 Gene3D - 26 318 - -
Vvi16g952 574 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 SUPERFAMILY Heme-dependent peroxidases 374 573 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 CDD secretory_peroxidase 22 318 IPR033905 GO:0004601|GO:0042744
Vvi16g952 574 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Vvi16g952 574 Gene3D Peroxidase, domain 2 158 302 - -
Vvi16g952 574 Gene3D - 375 522 - -
Vvi16g952 574 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vvi16g952 574 PANTHER PEROXIDASE 25-RELATED 360 573 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi16g952 574 PANTHER PEROXIDASE 25-RELATED 9 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g952 K00430 - vvi:100853331 622.468