Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g953 ATGCCAGAAGCCGAGGCTGAGCAAGTTGCCTCTCTCGAAGAGGATCTCCAGAAGAAGAAGCTTCTCGAAGAGGAGCCCGTGGTTGAAGACGTCAAGGACGAGGAAGAGGACGACGATGACGACGAGGACGACGAGGACGACGAGAAGGAAGATGGGGCCCAAGGTGCAAATGAGGGCTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGCAAGGCAATGTTGAAGCTCGGCATGAAACCCGTTACTGGTGTTGGAAGGGTCACCATTAAGAGAACAAAAAATATATTATTTTTCATCTCAAAGCCTGATGTCTTCAAGAGTCCAAATTCAGAGACCTATGTCATATTTGGGGAGGCGAAGATAGAGGATTTGAGCTCTCAGCTGCAGACACAGGCTGCACAACAGTTCAGGATGCCAGATATGGGGTCGGTGATGGCAAAATCAGACATTTCTGCTGCAGCTGCTGGAACACAAGCAGATGAGGAAGAGGAAGTGATTGATGAGACTGGGGTGGAGCCTCGAGACATTGATTTGGTGATGACTCAAGCTGGGGTGTCAAGGAGCAAGGCTGTTAAGGCTCTCAAGACTCACAATGGGGACATTGTCAGTGCTATCATGGAGCTCACCACCTAG 633 50.08 MPEAEAEQVASLEEDLQKKKLLEEEPVVEDVKDEEEDDDDDEDDEDDEKEDGAQGANEGSKQSRSEKKSRKAMLKLGMKPVTGVGRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMGSVMAKSDISAAAAGTQADEEEEVIDETGVEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT* 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21156214 21158377 - Vvi16g953 Vvi16g953 778602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g953 210 Pfam HYPK UBA domain 170 209 IPR044034 -
Vvi16g953 210 MobiDBLite consensus disorder prediction 1 73 - -
Vvi16g953 210 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 7 209 IPR016641 GO:0005854
Vvi16g953 210 PANTHER NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2 7 209 - -
Vvi16g953 210 SMART NAC_2 66 122 IPR002715 -
Vvi16g953 210 MobiDBLite consensus disorder prediction 28 52 - -
Vvi16g953 210 Pfam NAC domain 66 121 IPR002715 -
Vvi16g953 210 MobiDBLite consensus disorder prediction 11 27 - -
Vvi16g953 210 CDD UBA_NAC_euk 173 209 - -
Vvi16g953 210 ProSiteProfiles NAC A/B domain profile. 63 128 IPR002715 -
Vvi16g953 210 Gene3D - 72 125 IPR038187 -
Vvi16g953 210 Gene3D - 171 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g953 K03626 EGD2, NACA; nascent polypeptide-associated complex subunit alpha - vvi:100854239 307.375
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001063 2 3 1 2 2 2 3 2 2 2 3 3 5 2 2 5 3 6 3 2 1 2 3 2 2 2 3 5 2 2 79