Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g961 ATGGGTGAGGTTGTGGTGAGCAGTGAGGCAGGAGGAGGAGGCATGGAGGGTGAGGTGGAGAAGAAGGAGGTGGGCAGTGGGGTTGTGAGGTGGGAGAGGTTTCTTCCCAGAATGGTTCTCAGGGTTTTGTTGGTTGAAGCGGACGATTCCACCAGGCAAATTATCGCTGCGCTTCTCAGGAAATGCAGTTACAAAGTTGCTGCTGTTCCTGATGGCTTAAAGGCATGGGAGGTACTGAAGGCTAGACCCCACAACATTGACCTCATATTGACAGAAGTGGAGTTGCCATCAATATCTGGCTTTGCTCTCCTCACCTTGGTTATGGAACATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCACATGGTTCGATAAACACGGTTTATAAATGCATGTTGAGAGGTGCAGCTGACTTTCTTGTTAAGCCTGTTAGAAGAAATGAGCTGAAGAATTTGTGGCAACATGTCTGGAGAAGACAATCGTCAACTGTTAGCGGAAATGGCCCCCAAGATGAGAGTGTTGCACAACAGAAGGTCGAAGCCACTTCTGAAAACAACCCCACAAGTAATCACTCAAGTGATCATGTTGCTTGTATTCAGAAAAATAAGGAAGCACTCAATAAAGTGAGTGATGCTCAGAGCTCTTGTTCAAAGCCAGACTTGGAAGCTGAGAGTGCCTACATGGAAACTATGCAGGATTTCTCAAATCCGACATGGAGCAGATCTCTTGTGAGTGACACAAAAATGCAGAAGAATGAAGAATGTGCCAAATTGGGCCCGAAATTTCTTATGCACAATAAAGAAGCTGGGGGAACACTGGAGGCTGCCTGCAGGGATGTGAACACAATGACTCAGCCTGAAGCAGTGGAACCAGAAAATGATGGGCAAGGTGCTAACGCTCCTAGTGAGGCTTGTGGTAACAATGCCATATTGGGCAGCTCATCTAGAGAAGCCATCGACTTGATTGGAGTATTTGATAATTCTAAAAAATGCACTTATGGAAATTCTTCTTCAAATAATGGCACCAAAAAGAGTGATTCTATTCCACAGTTGGACCTTTCCTTGAGAAGATCTCATCCTAGTAGCCCTGAGAATCAAGTTGCTGATGAAAGGCATACACTGAACCATTCTAATGGCTCGGCCTTTTCACGCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTTCAATCAGCAGAAAAACTTTGGAGCTGATTCTGATAAACGTTTATCTCAGCTGGTTACTGGTTATAACTCTGATATTACTAGTCCCACACTGAGTACTCAAAGAAGTGTGATCTCTCTAGCTACTAGTCCATCTGGACGAGTTGAAATTGCACTTTGTGGCCCTCAACAGAGAGCTTTTCCTGCTCCAGTTCCACAAAATGCCAACAATTCCACCAGCCAGACTAATCACAAGCCAGAGCACAAATTGGACTCACTGGAGGGTCAAGGGCACTTCTCTCCTGCCACTGATCAGAATTCAAGTAGTAGTTTTGGTAATGGTGGTGCAAGTAATCTGAATAGCTTTGGGTGTGGAAGCATTTGTGGAAGTAATGGGAATGCCAATACAGTTGCTGTTGTTCAGGCCGCTGCAGAGGGCAAGAATGAAGAAGGTATCTTCAGTCATGAAGGACACTCTCAACGATCTATCCAAAGAGAAGCTGCTCTAACCAAGTTTCGCTTGAAGCGGAAAGACAGATGCTTTGAGAAGAAGGTTCGTTATGAAAGCAGAAAGAAGCTTGCAGAGCAGCGACCCCGAGTAAAAGGACAGTTTGTTCGACAAGTGCATACCATCCCCCCACCTGCAGAGCCTGATACATACTATGGCAGTTCGTTTGATGTTCAGCCTCAAAGAAGCCGATATCTATCAGCTCAACCTCTCAGGGCCTCATCTTCTCAACTCCTCTATCCAACTCACACTCCTCTCCAAGAATCCAAATACGAAGGTCATGAAGAAAGCAATCTCTTGACGGCGTCCTTGGTTGGAACTGCCCTACCGGTGGCTCCATCTTTTGGTTATGAAGTTGGACGTGATCAGACGGCAGGAAAACTTGTTCTGAGTTTAAAGCTCGATGGCCGGGTTCGATGGAAGGTGGGGACTTGGGTTTCTGGCCGATACCGACTTAACGTTAATTGTGTTGCTGTGATGGCATTTGGACCCTCCATCCCATCTGGTCCACTGAGTTCAAAAGAAGGAACTCAGTGCTCTACTACTGTTTGA 2244 45.77 MGEVVVSSEAGGGGMEGEVEKKEVGSGVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEVLKARPHNIDLILTEVELPSISGFALLTLVMEHEICKNIPVIMMSSHGSINTVYKCMLRGAADFLVKPVRRNELKNLWQHVWRRQSSTVSGNGPQDESVAQQKVEATSENNPTSNHSSDHVACIQKNKEALNKVSDAQSSCSKPDLEAESAYMETMQDFSNPTWSRSLVSDTKMQKNEECAKLGPKFLMHNKEAGGTLEAACRDVNTMTQPEAVEPENDGQGANAPSEACGNNAILGSSSREAIDLIGVFDNSKKCTYGNSSSNNGTKKSDSIPQLDLSLRRSHPSSPENQVADERHTLNHSNGSAFSRYINRSLQPPHLPSTGVFNQQKNFGADSDKRLSQLVTGYNSDITSPTLSTQRSVISLATSPSGRVEIALCGPQQRAFPAPVPQNANNSTSQTNHKPEHKLDSLEGQGHFSPATDQNSSSSFGNGGASNLNSFGCGSICGSNGNANTVAVVQAAAEGKNEEGIFSHEGHSQRSIQREAALTKFRLKRKDRCFEKKVRYESRKKLAEQRPRVKGQFVRQVHTIPPPAEPDTYYGSSFDVQPQRSRYLSAQPLRASSSQLLYPTHTPLQESKYEGHEESNLLTASLVGTALPVAPSFGYEVGRDQTAGKLVLSLKLDGRVRWKVGTWVSGRYRLNVNCVAVMAFGPSIPSGPLSSKEGTQCSTTV* 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21228110 21238026 - Vvi16g961 Vvi16g961 778610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g961 747 MobiDBLite consensus disorder prediction 460 507 - -
Vvi16g961 747 ProSiteProfiles CCT domain profile. 560 602 IPR010402 GO:0005515
Vvi16g961 747 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 18 468 - -
Vvi16g961 747 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 468 594 - -
Vvi16g961 747 ProSiteProfiles Response regulatory domain profile. 41 159 IPR001789 GO:0000160
Vvi16g961 747 SUPERFAMILY CheY-like 40 164 IPR011006 -
Vvi16g961 747 MobiDBLite consensus disorder prediction 493 507 - -
Vvi16g961 747 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 468 IPR045279 GO:0009736
Vvi16g961 747 PANTHER TWO-COMPONENT RESPONSE REGULATOR 468 594 IPR045279 GO:0009736
Vvi16g961 747 MobiDBLite consensus disorder prediction 356 375 - -
Vvi16g961 747 CDD psREC_PRR 42 145 - -
Vvi16g961 747 Pfam Response regulator receiver domain 42 153 IPR001789 GO:0000160
Vvi16g961 747 Gene3D - 38 271 - -
Vvi16g961 747 MobiDBLite consensus disorder prediction 464 478 - -
Vvi16g961 747 Pfam CCT motif 560 602 IPR010402 GO:0005515
Vvi16g961 747 SMART REC_2 40 155 IPR001789 GO:0000160
Vvi16g961 747 MobiDBLite consensus disorder prediction 162 196 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g611 Vvi16g961 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14167 PF00072 Response_reg 6.90E-21 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g961 K12130 - vvi:100853219 1043.49