Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g961 | ATGGGTGAGGTTGTGGTGAGCAGTGAGGCAGGAGGAGGAGGCATGGAGGGTGAGGTGGAGAAGAAGGAGGTGGGCAGTGGGGTTGTGAGGTGGGAGAGGTTTCTTCCCAGAATGGTTCTCAGGGTTTTGTTGGTTGAAGCGGACGATTCCACCAGGCAAATTATCGCTGCGCTTCTCAGGAAATGCAGTTACAAAGTTGCTGCTGTTCCTGATGGCTTAAAGGCATGGGAGGTACTGAAGGCTAGACCCCACAACATTGACCTCATATTGACAGAAGTGGAGTTGCCATCAATATCTGGCTTTGCTCTCCTCACCTTGGTTATGGAACATGAGATCTGCAAAAACATTCCTGTTATAATGATGTCCTCACATGGTTCGATAAACACGGTTTATAAATGCATGTTGAGAGGTGCAGCTGACTTTCTTGTTAAGCCTGTTAGAAGAAATGAGCTGAAGAATTTGTGGCAACATGTCTGGAGAAGACAATCGTCAACTGTTAGCGGAAATGGCCCCCAAGATGAGAGTGTTGCACAACAGAAGGTCGAAGCCACTTCTGAAAACAACCCCACAAGTAATCACTCAAGTGATCATGTTGCTTGTATTCAGAAAAATAAGGAAGCACTCAATAAAGTGAGTGATGCTCAGAGCTCTTGTTCAAAGCCAGACTTGGAAGCTGAGAGTGCCTACATGGAAACTATGCAGGATTTCTCAAATCCGACATGGAGCAGATCTCTTGTGAGTGACACAAAAATGCAGAAGAATGAAGAATGTGCCAAATTGGGCCCGAAATTTCTTATGCACAATAAAGAAGCTGGGGGAACACTGGAGGCTGCCTGCAGGGATGTGAACACAATGACTCAGCCTGAAGCAGTGGAACCAGAAAATGATGGGCAAGGTGCTAACGCTCCTAGTGAGGCTTGTGGTAACAATGCCATATTGGGCAGCTCATCTAGAGAAGCCATCGACTTGATTGGAGTATTTGATAATTCTAAAAAATGCACTTATGGAAATTCTTCTTCAAATAATGGCACCAAAAAGAGTGATTCTATTCCACAGTTGGACCTTTCCTTGAGAAGATCTCATCCTAGTAGCCCTGAGAATCAAGTTGCTGATGAAAGGCATACACTGAACCATTCTAATGGCTCGGCCTTTTCACGCTACATAAACAGGTCATTGCAGCCACCACATCTACCATCAACAGGTGTTTTCAATCAGCAGAAAAACTTTGGAGCTGATTCTGATAAACGTTTATCTCAGCTGGTTACTGGTTATAACTCTGATATTACTAGTCCCACACTGAGTACTCAAAGAAGTGTGATCTCTCTAGCTACTAGTCCATCTGGACGAGTTGAAATTGCACTTTGTGGCCCTCAACAGAGAGCTTTTCCTGCTCCAGTTCCACAAAATGCCAACAATTCCACCAGCCAGACTAATCACAAGCCAGAGCACAAATTGGACTCACTGGAGGGTCAAGGGCACTTCTCTCCTGCCACTGATCAGAATTCAAGTAGTAGTTTTGGTAATGGTGGTGCAAGTAATCTGAATAGCTTTGGGTGTGGAAGCATTTGTGGAAGTAATGGGAATGCCAATACAGTTGCTGTTGTTCAGGCCGCTGCAGAGGGCAAGAATGAAGAAGGTATCTTCAGTCATGAAGGACACTCTCAACGATCTATCCAAAGAGAAGCTGCTCTAACCAAGTTTCGCTTGAAGCGGAAAGACAGATGCTTTGAGAAGAAGGTTCGTTATGAAAGCAGAAAGAAGCTTGCAGAGCAGCGACCCCGAGTAAAAGGACAGTTTGTTCGACAAGTGCATACCATCCCCCCACCTGCAGAGCCTGATACATACTATGGCAGTTCGTTTGATGTTCAGCCTCAAAGAAGCCGATATCTATCAGCTCAACCTCTCAGGGCCTCATCTTCTCAACTCCTCTATCCAACTCACACTCCTCTCCAAGAATCCAAATACGAAGGTCATGAAGAAAGCAATCTCTTGACGGCGTCCTTGGTTGGAACTGCCCTACCGGTGGCTCCATCTTTTGGTTATGAAGTTGGACGTGATCAGACGGCAGGAAAACTTGTTCTGAGTTTAAAGCTCGATGGCCGGGTTCGATGGAAGGTGGGGACTTGGGTTTCTGGCCGATACCGACTTAACGTTAATTGTGTTGCTGTGATGGCATTTGGACCCTCCATCCCATCTGGTCCACTGAGTTCAAAAGAAGGAACTCAGTGCTCTACTACTGTTTGA | 2244 | 45.77 | MGEVVVSSEAGGGGMEGEVEKKEVGSGVVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEVLKARPHNIDLILTEVELPSISGFALLTLVMEHEICKNIPVIMMSSHGSINTVYKCMLRGAADFLVKPVRRNELKNLWQHVWRRQSSTVSGNGPQDESVAQQKVEATSENNPTSNHSSDHVACIQKNKEALNKVSDAQSSCSKPDLEAESAYMETMQDFSNPTWSRSLVSDTKMQKNEECAKLGPKFLMHNKEAGGTLEAACRDVNTMTQPEAVEPENDGQGANAPSEACGNNAILGSSSREAIDLIGVFDNSKKCTYGNSSSNNGTKKSDSIPQLDLSLRRSHPSSPENQVADERHTLNHSNGSAFSRYINRSLQPPHLPSTGVFNQQKNFGADSDKRLSQLVTGYNSDITSPTLSTQRSVISLATSPSGRVEIALCGPQQRAFPAPVPQNANNSTSQTNHKPEHKLDSLEGQGHFSPATDQNSSSSFGNGGASNLNSFGCGSICGSNGNANTVAVVQAAAEGKNEEGIFSHEGHSQRSIQREAALTKFRLKRKDRCFEKKVRYESRKKLAEQRPRVKGQFVRQVHTIPPPAEPDTYYGSSFDVQPQRSRYLSAQPLRASSSQLLYPTHTPLQESKYEGHEESNLLTASLVGTALPVAPSFGYEVGRDQTAGKLVLSLKLDGRVRWKVGTWVSGRYRLNVNCVAVMAFGPSIPSGPLSSKEGTQCSTTV* | 748 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 21228110 | 21238026 | - | Vvi16g961 | Vvi16g961 | 778610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g961 | 747 | MobiDBLite | consensus disorder prediction | 460 | 507 | - | - | |
Vvi16g961 | 747 | ProSiteProfiles | CCT domain profile. | 560 | 602 | IPR010402 | GO:0005515 | |
Vvi16g961 | 747 | PANTHER | POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA | 18 | 468 | - | - | |
Vvi16g961 | 747 | PANTHER | POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA | 468 | 594 | - | - | |
Vvi16g961 | 747 | ProSiteProfiles | Response regulatory domain profile. | 41 | 159 | IPR001789 | GO:0000160 | |
Vvi16g961 | 747 | SUPERFAMILY | CheY-like | 40 | 164 | IPR011006 | - | |
Vvi16g961 | 747 | MobiDBLite | consensus disorder prediction | 493 | 507 | - | - | |
Vvi16g961 | 747 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 18 | 468 | IPR045279 | GO:0009736 | |
Vvi16g961 | 747 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 468 | 594 | IPR045279 | GO:0009736 | |
Vvi16g961 | 747 | MobiDBLite | consensus disorder prediction | 356 | 375 | - | - | |
Vvi16g961 | 747 | CDD | psREC_PRR | 42 | 145 | - | - | |
Vvi16g961 | 747 | Pfam | Response regulator receiver domain | 42 | 153 | IPR001789 | GO:0000160 | |
Vvi16g961 | 747 | Gene3D | - | 38 | 271 | - | - | |
Vvi16g961 | 747 | MobiDBLite | consensus disorder prediction | 464 | 478 | - | - | |
Vvi16g961 | 747 | Pfam | CCT motif | 560 | 602 | IPR010402 | GO:0005515 | |
Vvi16g961 | 747 | SMART | REC_2 | 40 | 155 | IPR001789 | GO:0000160 | |
Vvi16g961 | 747 | MobiDBLite | consensus disorder prediction | 162 | 196 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14167 | PF00072 | Response_reg | 6.90E-21 | CL0304 | Vvi | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g961 | K12130 | - | vvi:100853219 | 1043.49 |