Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g964 ATGTCCTGGGACGGTCCGCTCTCGTCGGTTAAACTGATCCTCCAGGGCAAAAATTTGGAGTTAACTGATACAGTTAGGAGCCATGTGGAAGAGAAAGTGGGGAAGGCAGTTCAGAAGCATAGCCATCTTGTGAGGGAAGTGGATGTTAGGTTGTCTATTCGAGGCGGAGAGCTTGGGAAAGGCCCCAAGATTCGGAGATGTGAGGTGACTTTGTTTACGAAGAAGCATGGAGTGGTTCGGGCCGAGGAACATGCTGAGACACTCTATGGGAGTATTGATATGGTGTCTTCTATTATACAGAGGAAATTGAGGAAGATTAAGGAGAAGGATTCAGACCATGGTCGACATATGAAGGGGTTCAACAGACTTAAAGTGAGGGATCCAGAGACTCCATTAGTGGAGGAGGAAGCTGATGTAGTTCCTCAAAAAGAGGATGGGGACCTAATCAATGAGATTGTTCGGACAAAATACTTTGACATGCCACCTTTGACTGTACCTGAAGCCGTTGAGCAGCTGGAAAATGTTGATCATGACTTCTTTGGTTTTCGAAATGAAGAAACTGGTGAGATTAATATTTTGTACAAAAGAAAAGCTGGTGGATATGGGCTTATTATTCCTAAAGAAAATGGCAAAACTGAGGAATTAGAGCCTGTGGTGGTAAAGTCAGATAGGGAACCTTCCTTGGCAGAATAG 693 44.44 MSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRDPETPLVEEEADVVPQKEDGDLINEIVRTKYFDMPPLTVPEAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDREPSLAE* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21255004 21256990 + Vvi16g964 Vvi16g964 778613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g964 230 Hamap Ribosome hibernation promoting factor [hpf]. 10 207 IPR034694 -
Vvi16g964 230 Gene3D - 162 213 IPR038416 -
Vvi16g964 230 PANTHER 30S RIBOSOMAL PROTEIN 1 210 - -
Vvi16g964 230 Gene3D - 11 121 IPR036567 -
Vvi16g964 230 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 13 109 IPR003489 GO:0044238
Vvi16g964 230 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 11 116 IPR036567 -
Vvi16g964 230 TIGRFAM yfiA: ribosomal subunit interface protein 11 114 IPR003489 GO:0044238
Vvi16g964 230 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 150 203 IPR032528 -
Vvi16g964 230 CDD RaiA 11 109 IPR003489 GO:0044238
Vvi16g964 230 PANTHER 30S RIBOSOMAL PROTEIN 1 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g964 - - - vvi:100853929 460.685
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g964 . . . Bda07g01958 . . . Bma14g02029 Cmo16g00020 . . . . . . . Cpe14g00016 . . . . . . . . . . . . . . Cone1ag1020 Cone5ag0727 . . . . . . . Blo09g00002 . . . . . . . . . . . Car16g00017 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012302 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29