Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g971 ATGAGTGGCCGATTTTCTCGCACAATCTATGTTGGCAATCTGCCTTCGGATATAAGAGAATATGAAATTGAAGATCTATTCTACAAGTATGGTCGCATATTGGACGTTGAGTTGAAGATCCCACCTCGTCCCCCTTGTTATTGTTTTGTGGAGTTTGAGAATTCTCGGGATGCGGAAGATGCAATTAGGGGTCGTGATGGCTATAATTTTGATGGTTGTCGTCTGAGGGTTGAACTTGCCCATGGTGGTAGAGGGCAATCATCTTCAAGCGATCGTCGTGGTGGCCATGGTAGCGGGGGTGGGGGCCGCTTTGGTGTTTCACGCCATTCTGAGTATCGAGTTATTGTTCGTGGGCTTCCAAGTTCTGCTTCCTGGCAAGATTTAAAGGATCACATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGATGCTGATGGAACCTTTGGTCTTGTTGATTATACCAATCATGAAGACATGAAATACGCTATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGGGCTTATATTCGGGTGAAGAGGTATGATGTCAGTCCAAGAAGCCGAAGCCGAAGCCATAGTCCCAGTAGAAGCAGGAGCCTAAAAAGGAACCGGAGCAAATCATTGGAACGATCTGTATCAAGATCAGCTTCAAAATCTAGATCTCCATCTCCTGTCAGGCGATCAAGGTCCAGATCAGCATCTCCCCGTCCGGCCAGATCAGGTAGCGCCTGA 753 46.75 MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAEDAIRGRDGYNFDGCRLRVELAHGGRGQSSSSDRRGGHGSGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDADGTFGLVDYTNHEDMKYAIRKLDDTEFRNPWARAYIRVKRYDVSPRSRSRSHSPSRSRSLKRNRSKSLERSVSRSASKSRSPSPVRRSRSRSASPRPARSGSA* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21297785 21301549 - Vvi16g971 Vvi16g971 778620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g971 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Vvi16g971 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Vvi16g971 250 CDD RRM2_SF2_plant_like 112 186 - -
Vvi16g971 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Vvi16g971 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Vvi16g971 250 CDD RRM1_SF2_plant_like 8 79 - -
Vvi16g971 250 MobiDBLite consensus disorder prediction 81 106 - -
Vvi16g971 250 Gene3D - 2 111 IPR012677 -
Vvi16g971 250 SUPERFAMILY RNA-binding domain, RBD 6 180 IPR035979 GO:0003676
Vvi16g971 250 SMART rrm1_1 113 182 IPR000504 GO:0003723
Vvi16g971 250 SMART rrm1_1 8 78 IPR000504 GO:0003723
Vvi16g971 250 Gene3D - 112 189 IPR012677 -
Vvi16g971 250 MobiDBLite consensus disorder prediction 189 250 - -
Vvi16g971 250 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 240 - -
Vvi16g971 250 MobiDBLite consensus disorder prediction 221 250 - -
Vvi16g971 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g971 K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1 - vvi:100853709 370.163
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127