Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g973 ATGGCCTCCCGTTTCCAAGCCGCTTCGCTCGTGGCTTCGCCGTCGTACCCCAATGCCGTCGCCTGGTCCGACGAGAACCTCATCGCCGTCGCCACCGGCCACCTCGTCACCATACTGAATCCGGCATTGCCATTTGGACCGCGAGGTTTGATAACGATTCCGGCCAACAAGCCCTTTCCGATTGGGGTGATAGAAAGACAAGATTTATACTCAGGCTGCTTGTTGAGCACTTGTTTATCACGAGACATCCGACCATGTGTTAGATCAATTTCATGGTCACATATAGGATTGGCTCCTAATGCAGGATGCTTGCTTGCTATTTGCACCATAGAAGGACGTGTGAAGCTGTATCGTGCACCATTTTGTGAGTTCCAAGTTGAGTGGGTAGAGGTTGTGGATATAACAGACATGCTCTATGATTATCTTGCAAATATTAGTTTTGGAGAGTCAGAAACTGCTGTATCTTCTGATGTAAGTTCTTTCACCTTACAATTCTCTTTACATGTGCTGTGTTTACCACCTGAAACCGATTCAGCTCCTCCAGATAACTCATCCAACTGCTTTTCTCTACTTGCAGTTGGTGGGAAATCTGGTAAAATTTCCTTTTGGAGAGTTCATGAACCGCTATCCTATACTGTTGAGCACAGCAGGGTTCCCATCAGTGTGATGCTTGCTGGATTCCATCAGGCACATAACACATGGGTCACTGCAATCAGTTGGGCATTACTAACTTCTGATGCTTCAAGTCCTCAGGTTTTACTTGCTACAGGGAGTACAGATGGGAGTGTGAAGATTTGGCTAGAATACAGTGAGAAATTGCTGAAATCATCTGAGGTCAATGATCCCCCTTTCTCATTGTTGAAAGAGGTTATAAATGCTGATTCTGTCCCAGTTTCAGTTCTCACGCTTATTGTGCCTGTACAATCACCACAGAAGATGTTCTTAGCAGTTGGCAAGGGATGTGGATCTTTTGAAGTATGGATATGTGATTTATCTATCAGAAAATTTGATAGAATCGGCTCATATAATGCACATGATCATGTTGTTACAGGTTTAGCTTGGGCTTTCGATGGATGTTGTTTGTACAGCTGCAGCCAGGATAATTCTGTGCGTAGCTGGAGTTTATGTGGGAATTCCCTCGATGAAGTACCCATTCCTCCAAATACTCCTGGTGTAAAGAACCCTGCCGATGACCTCCCATATTTATTTGGTTCATGCTATGGTGTAGCAGTATCCCCTGGAAATCTGGTGGTTGCTGTGGCTCGTGGTTTTGATGCTGGTCTATTGAATCCAATGTATCAGGCAAGGACTCAAAAGGCTGCCATTGAGTTCTTCTGGATAGGTGGGCAACAACTTGAAAGTTCAACAAACAGAAACCTAGAGTTTGGTATTGAAAATTTTCCTGGTTTTCCTAAGAAGGAATTGATTTATTGGGAGTGTAATATGTTGTGGTATTTAAGTCAATATGAGCATCTGGATAAGCCTTTGGTAGTTTGGGATATAGTTGCAGCATTGTTGGCTTTCAAGCAGTCTGCACCTAAGTATGTGGAACTTGTACTGGTTAAGTGGCTCTCAGTTTCAAATGTGGAATCCCATCTGGGCCTTTCAACAGGAAATATTTTGTCTCATGCCTCCAGAACTTTCTCAAATACTACTACCCGAAAGTTGCACCTTTTCAATATCATCTGTAGACATGTAGTACTATCTGAGCTGAAGGCAGATAAAATTAACAGCAAACAGCCTAATCTAGAAGAATTTGGTGGTGCTGAGGAGGAAAAACTGAAGTTGTGGATGGAGCTACTTCTTTGCAGTGAAAGAGAACTCCGTGAAAGGCTTGTGGGTTTTGCTTTTTCTACTGTTTTAGGTCTCATGTCCTCTTTGGCTGCAAAAGTTTATAGAGCTGAGGGCTGGGATCCTGTTGGATTAGCACAAATGGAGCAGTGGGTTGCACTTAATTATGATCATGTACAGGATCAACTAAAACTCCTTGCATCAGAAGTTAGAAACCTTGATAAGAGGAAGCTGCATTCTGTTTGTGAATATGTAGCAGGGGAGCAATGTAGCTATTGTTCAGCATCTGTTCCATTTGAATCTCCAGAGATTGCTTTTTGCCAAGGTGCAAAGTGCAGTGGTGGGGTTGGTCAGAGCCATAAACTAGCACGGTGTGCCGTTTGCATGCAGGTCTGCCCTCCTACATCCTCCTGGTTTTGCACGTGTTGTCAGAGATATTCTTCAAAACTGGCTCCCCCACAATTTTTTCTCATGCCCAGATATCCACTGGATTTCAAGTCTTCAACTGAATCCTGCACCTTAAACAGTTTCTCTAAACCCTTCTGCCCCTTCTGTGGAATACTGCTACAAAGATTACAACCGGTATTTCTACTCTCTGCATCACCAGCATAA 2403 43.7 MASRFQAASLVASPSYPNAVAWSDENLIAVATGHLVTILNPALPFGPRGLITIPANKPFPIGVIERQDLYSGCLLSTCLSRDIRPCVRSISWSHIGLAPNAGCLLAICTIEGRVKLYRAPFCEFQVEWVEVVDITDMLYDYLANISFGESETAVSSDVSSFTLQFSLHVLCLPPETDSAPPDNSSNCFSLLAVGGKSGKISFWRVHEPLSYTVEHSRVPISVMLAGFHQAHNTWVTAISWALLTSDASSPQVLLATGSTDGSVKIWLEYSEKLLKSSEVNDPPFSLLKEVINADSVPVSVLTLIVPVQSPQKMFLAVGKGCGSFEVWICDLSIRKFDRIGSYNAHDHVVTGLAWAFDGCCLYSCSQDNSVRSWSLCGNSLDEVPIPPNTPGVKNPADDLPYLFGSCYGVAVSPGNLVVAVARGFDAGLLNPMYQARTQKAAIEFFWIGGQQLESSTNRNLEFGIENFPGFPKKELIYWECNMLWYLSQYEHLDKPLVVWDIVAALLAFKQSAPKYVELVLVKWLSVSNVESHLGLSTGNILSHASRTFSNTTTRKLHLFNIICRHVVLSELKADKINSKQPNLEEFGGAEEEKLKLWMELLLCSERELRERLVGFAFSTVLGLMSSLAAKVYRAEGWDPVGLAQMEQWVALNYDHVQDQLKLLASEVRNLDKRKLHSVCEYVAGEQCSYCSASVPFESPEIAFCQGAKCSGGVGQSHKLARCAVCMQVCPPTSSWFCTCCQRYSSKLAPPQFFLMPRYPLDFKSSTESCTLNSFSKPFCPFCGILLQRLQPVFLLSASPA* 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21304767 21311485 + Vvi16g973 Vvi16g973 778622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g973 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 266 IPR001680 GO:0005515
Vvi16g973 800 SUPERFAMILY WD40 repeat-like 10 423 IPR036322 GO:0005515
Vvi16g973 800 Pfam WD domain, G-beta repeat 229 266 IPR001680 GO:0005515
Vvi16g973 800 Pfam WD domain, G-beta repeat 339 374 IPR001680 GO:0005515
Vvi16g973 800 SMART WD40_4 335 374 IPR001680 GO:0005515
Vvi16g973 800 SMART WD40_4 3 40 IPR001680 GO:0005515
Vvi16g973 800 SMART WD40_4 221 267 IPR001680 GO:0005515
Vvi16g973 800 SMART WD40_4 71 118 IPR001680 GO:0005515
Vvi16g973 800 Coils Coil 653 673 - -
Vvi16g973 800 Gene3D - 307 386 IPR015943 GO:0005515
Vvi16g973 800 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY 1 785 IPR044230 GO:0000127|GO:0004402|GO:0006384
Vvi16g973 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 342 375 - -
Vvi16g973 800 Pfam Transcription factor IIIC subunit delta N-term 14 148 IPR024761 -
Vvi16g973 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 375 IPR001680 GO:0005515
Vvi16g973 800 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 1 785 - -
Vvi16g973 800 Gene3D - 3 266 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g973 - - - vvi:100853102 1288.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1017 Cone5ag0725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009458 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 32