Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g974 ATGGCGGTTGTGGAGAATGCTGGAAATAAAGTGGGGTCGTCGAGTGCGAATTCTGAGAGTGCGGACACCAACGATTTTGGTCAATCGCAGCCGAGTAATCACACAGTTATGCAGAATTTGCAGCAGAAGAACACTAATAGCAAACCGATTTTGCTGCCAAATGATGAAAACTATTACTCGCAGAAGATACCCCAATTTCAGCAGAAAGCGGGGAGCAACGGAGTGGCCAAGATTCAGATGGTGGGGAGTTTCGGAAGAGATAGAGAAGATGGTGGGGATATTAGGGATTTGGAGGACCTTCTCTCCAAGTTGAACCCCATGGCCGAAGAATTTGTTCCACCTTCTCTCGCAAATGGCCATGGATGGTCTGCTGGTGCTGCTTTTGGATACACTAACAACTTTGTATTGCAGGCTAATTTTGGCAATGCAAATGGGAATGCTGGTAGACGGAAGAGGAACAATTATAATCAGAAGCGGAGAATCAACAGCCGAACCAGCATGGCACAGCGGGAGGAAGTGATTAAGAGGACAGTATATGTGTCTGACATTGATCAGCAGGTCACTGAGGAAGATCTTGCTGCTCTTTTTATCAATTGTGGCCAGGTTGTTGACTGTCGTATATGTGGTGATCCTAATTCCGTTCTCCGATTTGCCTTCGTTGAATTTACTGATGAGGAAGGCGCGCGGGCTGCTCTGAGTTTGGCGGGAACAATGCTTGGGTATTATCCAGTGAGAGTGCTACCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGTCTGAAGATGAACGTGAAATGTGCGCCAGGACTATTTACTGTACAAATATTGATAAGAAGGTGACCCAGGCAGAAGTCAAACTTTTCTTTGAATCAATTTGTGGAGAGGTTCATCGCTTGAGGCTGCTTGGAGACTATCATCACTCTACTCGAATTGCTTTTGTCGAGTTTGTAATGGCCGAGAGTGCAATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTTGCATTGA 1086 46.87 MAVVENAGNKVGSSSANSESADTNDFGQSQPSNHTVMQNLQQKNTNSKPILLPNDENYYSQKIPQFQQKAGSNGVAKIQMVGSFGRDREDGGDIRDLEDLLSKLNPMAEEFVPPSLANGHGWSAGAAFGYTNNFVLQANFGNANGNAGRRKRNNYNQKRRINSRTSMAQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQAEVKLFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGAILGSLPIRVSPSKTPVRPRAPRPALH* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21322700 21327801 + Vvi16g974 Vvi16g974 778623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g974 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 342 IPR000504 GO:0003723
Vvi16g974 361 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 240 IPR000504 GO:0003723
Vvi16g974 361 CDD RRM2_CID8_like 269 350 IPR034825 -
Vvi16g974 361 CDD RRM1_CID8_like 174 253 IPR034823 -
Vvi16g974 361 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 361 - -
Vvi16g974 361 MobiDBLite consensus disorder prediction 1 33 - -
Vvi16g974 361 Gene3D - 139 253 IPR012677 -
Vvi16g974 361 Gene3D - 260 355 IPR012677 -
Vvi16g974 361 SUPERFAMILY RNA-binding domain, RBD 264 355 IPR035979 GO:0003676
Vvi16g974 361 SMART rrm1_1 274 345 IPR000504 GO:0003723
Vvi16g974 361 SMART rrm1_1 177 247 IPR000504 GO:0003723
Vvi16g974 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 349 IPR000504 GO:0003723
Vvi16g974 361 SUPERFAMILY RNA-binding domain, RBD 162 252 IPR035979 GO:0003676
Vvi16g974 361 Pfam Ataxin-2 C-terminal region 102 115 IPR009818 -
Vvi16g974 361 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 251 IPR000504 GO:0003723
Vvi16g974 361 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 361 - -
Vvi16g974 361 MobiDBLite consensus disorder prediction 8 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g974 - - - vvi:100245327 688.337
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g255 Vvi16g974 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g974 . . Bda05g00141 Bda07g01957 . . Bma10g01318 Bma14g02028 Cmo16g00026 Cmo18g01373 . . . . . . Cpe14g00018 . . . . . . . . . . . . . . . . . . . . . . Blo07g00318 Blo09g00003 . . . . . . . . . Cma16g00021 Cma18g01339 Car16g00021 . Cpe09g00011 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45