Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g975 ATGATTTTTCATTGGAAATCACTGCTACTATTCTCTTGTGCCCACTTGCTCCTTTTTTATTGTCTTCTGGGCTCTTGTTTGTTTGGAGTTGTGGTGGTGGTGAGGTGGTTGTGGTGGTATTCATGTCTCATCCAAGGCAGTATCAAATGGTGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAAGGATATGGCTTTGTAACATTCAAGGATCCAGATTCAGCAATGAGAGCTTGCCAAGATCCCTCCCCTGTCATTGATGGAAGGAGAGCCAATTGCAATATTGCCTCTCTTGGTGCCCACAAGACTCGCCCTCCTCCCCATCATGGAATGGAGAGACTCAGACCAGCATCAGGATCAATGGGAAAACCCAGCCACCATGGCTCCTCAACAAATTTCCGTCAATCCAATCCCCATTTTTCATTCCCCCCTTACTCTGTCTATGGGTACTCTGGTTATCCACAAGAACTATATGCAATGAACTACTACAATGCATATAGTGGGCAGCAGATGTCATCCTACTACTCCTCACCTTCGGGTACGCCTGGAGTTTACTACGGTTACTATCCAGTCTACACTCAGCAAGGCCAGAGCAGCCAAATGCAAGGTTTTGGAATTCAGTACCCACAAACAACACAGTACCCTTACTTGCCTCAGCCATACCAGGCTGTTGGGATCTTACCACTTCCAGCTTCAGCTTCTGCTTCAGCTTCAGCTTCCCTGGGAGCCACTGCCACTGGTGCAGCCACAGCAGCAGGGGAAGTGACAAGGACTGCTGCAGCCTCTGAGCAGGAATTTAGAGCTTGCTCCTGTAACCATACATTTGTTCATTGTCATCCACCTCCACCACCACCCACCACCACCACCACCACCATAATCACCATCGTCAATCAGCACACCTTTTTTTTTCTTACCTATTTTGGAGAATACAGTATAGAGGAGCCATTCACCCTTTTCATAGGTGTGGCCTTGAAACAGATTTTTGAATCAAATTCTCGGAAGTATGAGGCTTCCCATGGCAAACCCATGTTTGTGTTAGCACTAGTGACACACCCACATTGCCAACATTTAATGGGGGCGTGTGTGGAATCCAATGTTTGA 1176 43.2 MIFHWKSLLLFSCAHLLLFYCLLGSCLFGVVVVVRWLWWYSCLIQGSIKWWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGYGFVTFKDPDSAMRACQDPSPVIDGRRANCNIASLGAHKTRPPPHHGMERLRPASGSMGKPSHHGSSTNFRQSNPHFSFPPYSVYGYSGYPQELYAMNYYNAYSGQQMSSYYSSPSGTPGVYYGYYPVYTQQGQSSQMQGFGIQYPQTTQYPYLPQPYQAVGILPLPASASASASASLGATATGAATAAGEVTRTAAASEQEFRACSCNHTFVHCHPPPPPPTTTTTTIITIVNQHTFFFLTYFGEYSIEEPFTLFIGVALKQIFESNSRKYEASHGKPMFVLALVTHPHCQHLMGACVESNV* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21329146 21331591 - Vvi16g975 Vvi16g975 778624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g975 391 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vvi16g975 391 PANTHER - 85 287 - -
Vvi16g975 391 SUPERFAMILY RNA-binding domain, RBD 85 133 IPR035979 GO:0003676
Vvi16g975 391 PANTHER BOULE-RELATED 85 287 IPR037366 GO:0003729
Vvi16g975 391 MobiDBLite consensus disorder prediction 129 160 - -
Vvi16g975 391 Gene3D - 79 127 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g975 - - - vri:117933008 302.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g620 Vvi16g975 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g975 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0724 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0071978 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1