Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g979 ATGGTGCTTTTCTTTGAATCAAAGCTAAAACCCTCTCAATTTTTTATCAAGAAGTTGCAGAAAACGACCAAATTCGACACGTTGAATTCGTTTCTTTATGGTTTTTGCCATTTCCTACTACTCCCCATAAGGTCATCAGCTGGCATCCCCACAGTTTCAAGAATGGCTGTGGAAAACCATCAGCAGAAAGCAGTGGCAGCCTCCCATAAGCATTTGCTCTCCCTTGATCTCAGCATCAACAACTTCACTGGTGGAATCCCTCAGCTGCTGGGAAACTGCAGCCGACTGAGTACGATTCTCCTTAATGACAATGGCCTCCAAGGATCAATCCCTGCTCAGATTTTCTCAAAGCAGCTGTTAGAACTCAACTTGGGGACTAACTTGCTCTGGGGTACGATTCCTTCTGAGGTAAGATTATGCAGGAATCTTGAATATTTAGGACTGTACAACAATTTCTTATCTGGGGAGATTCCAAGAGAATTATTCTCTCTACCAAAGCTGAAGTTTCTGTATTTGAACACCAATAATCTCACTGGAACTTTACCAAACTTCCCACCATCATGTGCCATTTCTGATCTTTGGATTCATGAGAATGCTCTCTCTGGATCTTTACCTCATTCTCTGGGAAACTGCAGAAACCTCACTATGTTCTTTGCATCTTATAACAACTTTGGAGGGATCATTCCACCAGAGATCTTCAAAGGTCTGGTGCAGCTTGAATTTCTCTATCTTGATTCCAACAAACTTGAGGGGCAGATCCCAGAGACTTTGTGGGGTCTTGGGGAGTTAAAAGAGCTTGTTCTTTCGGGGAATATGCTTAATGGGAGAATACCTGAAAGGATAGCTCAATGCCATCAGCTAGCTGTTCTATCACTCTCGACTAATAATCTGGTTGGGCAGATTCCTCCATCAATTGGAAGTCTCAAAGATCTATACTTTGTTTCTCTCTCTGATAACATGCTTCAAGGCTCATTGCCTCCAGAGGTTGGAAATTGTAGTTCTCTAGTTGAACTTAGGCTCCAGAACAACTTGATTGAAGGGAGAATCCCCTCAGAAGTCTGCAAACTTGAGAATCTTGAGGTATTTCACTTGTTCAACAATCATATCAAGGGCCGAATTCCTCAGCAGATAGGAAGAATGAGCAACCTTGTGGAGTTGGCTCTGTATAACAATAGCTTGACTGGTAGAATTCCATCAGGGATTACCCATTTGAAAAAACTCACATTCCTGTCCTTAGCGGACAATAATCTCACTGGGGAGGTGCCTTCTGAGATTGGGAGAAACAACTCTCCTGGTCTAGTTAAGTTGGATTTAACTGGGAATCGCCTTTATGGACTGATTCCTTCATATATATGCAGTGGCAATAGCCTTTCAGTTTTGGCTCTTGGAAACAATAGTTTCAATGGGACTTTTCCAGTTGAACTTGGAAAATGCTCTTCTCTTAGGAGAGTGATTCTTAGTTATAATCTTCTGCAAGGGAGTATACCAGCAGAATTGGATAAGAACCCAGGAATTTCTTTCTTAGACGCTCGAGGAAACTTGCTGGAAGGCAGCATACCCCCAGTGGTTGGTTCTTGGAGCAACCTCTCAATGCTTGATCTTTCAGAAAATAGGCTATCTGGCTCTATACCTCCTGAGCTTGGAATGCTGGGAAATCTTCAAATGTTACTACTTTCTTCAAACAGACTGAATGGAAGCATTCCTCCTGAGCTGGGGTATTGCTCACAAATGATCAAAATGGACCTCAGCAAGAACTCTCTCAGAGGAAACATTCCTTCAGAGATCACTTCATTTGTGGCCCTGCAGAACCTTCTCCTTCAAGACAACAACCTCAGTGGAGTGATTCCAGACTCATTCTCTTCACTAGAGAGTCTCTTTGACTTGCAGCTTGGAAACAACATGCTTGAAGGCTCTATCCCTTGCAGCTTAGGCAAACTTCACCAGCTCAATTCAGTACTTAACCTGAGCCACAATATGCTCTCTGGTGAAATCCCCAGATGCCTCAGCGGTTTAGACAAGTTACAGATTCTTGATCTCTCAAGCAACAATTTCTCTGGAACGATTCCGCCTGAACTGAACAGCATGGTGTCCCTTTCCTTTGTGAACATATCATTCAACCATCTCTCTGGGAAAATACCAGATGCCTGGATGAAATCAATGGCTTCATCTCCAGGGTCTTATCTAGGAAACCCAGAACTCTGCCTGCAGGGAAATGCAGATAGAGATAGTTATTGTGGGGAAGCAAAAAACTCCCATACAAAAGGCCTAGTGCTGGTTGGCATCATTCTAACTGTGGCGTTCTTTATAGCATTACTCTGTGCTGCAATTTATATAACCTTGGATCATCGACTCAGGCAGCAACTTTCCTCCCAGACTCGATCTCCTCTTCATGAGTGCCGATCAAAGACTGAGGATTTGCCCGAGGATTTGAAACTAGAAGATATTATAAAGGCGACAGAAGGGTGGAATGATAGGTATGTGATTGGAAGAGGCAAGCATGGAACTGTTTACAGGACAGAAACTGAGAACTCCAGAAGGAACTGGGCTGTGAAGAAGGTGGATTTGTCTGAGACAAACTTCAGCATTGAGATGAGGACTTTGAGCTTGGTTAGGCACAGAAATGTTGTGAGAATGGCAGGATATTGCATCAAAGATGGCTATGGTTTCATTGTGACCGAGTATATGGAAGGTGGGACCCTCTTTGATGTGCTGCATTGGAGAAAACCTCTGCATACGAACTTCCCTACTCCATTGATCTATAAGACTGACCATCAGAAGCTTACCTCTCTGAATTCTTTATCTTCTCCTCGTGTTCCAGAAAATGGACACTCAACCCGGTTGACAGAGAAATGTGATGTGTACAGCTATGGAGTCATTTTGCTAGAGCTTCTCTGCAGAAAACTGCCAGTGGACCCTTCCTTTGAAGAAGGCCTGGATATTGCGTCCTGGACAAGGAAGAACTTGCAGGAGAACAATGAATGCTGCAGCTTCCTTGATGTGGAAATTGGTTCCTGGAATGTAGATGAACAATGGAAGGCATTGAAGCTGCTGGAGTTGGCACTGGATTGCACTGAACTGGAGCCTGGCATAAGGCCCTCTATGAGAGATGTAGTGGGATATCTTATAAAGTTGAATGATAAACAAGAAGGAACTGTACACACCAGAGACAATTCAGGTTCTTAA 3183 43.42 MVLFFESKLKPSQFFIKKLQKTTKFDTLNSFLYGFCHFLLLPIRSSAGIPTVSRMAVENHQQKAVAASHKHLLSLDLSINNFTGGIPQLLGNCSRLSTILLNDNGLQGSIPAQIFSKQLLELNLGTNLLWGTIPSEVRLCRNLEYLGLYNNFLSGEIPRELFSLPKLKFLYLNTNNLTGTLPNFPPSCAISDLWIHENALSGSLPHSLGNCRNLTMFFASYNNFGGIIPPEIFKGLVQLEFLYLDSNKLEGQIPETLWGLGELKELVLSGNMLNGRIPERIAQCHQLAVLSLSTNNLVGQIPPSIGSLKDLYFVSLSDNMLQGSLPPEVGNCSSLVELRLQNNLIEGRIPSEVCKLENLEVFHLFNNHIKGRIPQQIGRMSNLVELALYNNSLTGRIPSGITHLKKLTFLSLADNNLTGEVPSEIGRNNSPGLVKLDLTGNRLYGLIPSYICSGNSLSVLALGNNSFNGTFPVELGKCSSLRRVILSYNLLQGSIPAELDKNPGISFLDARGNLLEGSIPPVVGSWSNLSMLDLSENRLSGSIPPELGMLGNLQMLLLSSNRLNGSIPPELGYCSQMIKMDLSKNSLRGNIPSEITSFVALQNLLLQDNNLSGVIPDSFSSLESLFDLQLGNNMLEGSIPCSLGKLHQLNSVLNLSHNMLSGEIPRCLSGLDKLQILDLSSNNFSGTIPPELNSMVSLSFVNISFNHLSGKIPDAWMKSMASSPGSYLGNPELCLQGNADRDSYCGEAKNSHTKGLVLVGIILTVAFFIALLCAAIYITLDHRLRQQLSSQTRSPLHECRSKTEDLPEDLKLEDIIKATEGWNDRYVIGRGKHGTVYRTETENSRRNWAVKKVDLSETNFSIEMRTLSLVRHRNVVRMAGYCIKDGYGFIVTEYMEGGTLFDVLHWRKPLHTNFPTPLIYKTDHQKLTSLNSLSSPRVPENGHSTRLTEKCDVYSYGVILLELLCRKLPVDPSFEEGLDIASWTRKNLQENNECCSFLDVEIGSWNVDEQWKALKLLELALDCTELEPGIRPSMRDVVGYLIKLNDKQEGTVHTRDNSGS* 1061
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21357595 21361368 + Vvi16g979 Vvi16g979 778628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g979 1060 Gene3D Transferase(Phosphotransferase) domain 1 920 1059 - -
Vvi16g979 1060 SUPERFAMILY L domain-like 253 543 - -
Vvi16g979 1060 ProSiteProfiles Protein kinase domain profile. 822 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g979 1060 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PEPR1 65 933 - -
Vvi16g979 1060 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PEPR1 938 1046 - -
Vvi16g979 1060 PRINTS Leucine-rich repeat signature 529 542 - -
Vvi16g979 1060 PRINTS Leucine-rich repeat signature 671 684 - -
Vvi16g979 1060 SUPERFAMILY L domain-like 69 350 - -
Vvi16g979 1060 SMART LRR_typ_2 404 428 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 260 284 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 598 621 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 671 695 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 356 380 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 308 332 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 550 574 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 236 259 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 646 670 IPR003591 -
Vvi16g979 1060 SMART LRR_typ_2 164 186 IPR003591 -
Vvi16g979 1060 Pfam Protein kinase domain 826 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g979 1060 ProSiteProfiles Leucine-rich repeat profile. 528 550 IPR001611 GO:0005515
Vvi16g979 1060 Gene3D Ribonuclease Inhibitor 355 428 IPR032675 -
Vvi16g979 1060 Gene3D Phosphorylase Kinase; domain 1 782 894 - -
Vvi16g979 1060 Gene3D Ribonuclease Inhibitor 187 354 IPR032675 -
Vvi16g979 1060 Gene3D Ribonuclease Inhibitor 429 740 IPR032675 -
Vvi16g979 1060 Gene3D Ribonuclease Inhibitor 64 186 IPR032675 -
Vvi16g979 1060 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 938 1046 - -
Vvi16g979 1060 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 65 933 - -
Vvi16g979 1060 SUPERFAMILY L domain-like 524 716 - -
Vvi16g979 1060 Pfam Leucine rich repeat 228 273 IPR001611 GO:0005515
Vvi16g979 1060 Pfam Leucine rich repeat 601 660 IPR001611 GO:0005515
Vvi16g979 1060 SUPERFAMILY Protein kinase-like (PK-like) 812 1045 IPR011009 -
Vvi16g979 1060 ProSitePatterns Protein kinases ATP-binding region signature. 828 852 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g979 - - - vvi:100245296 1865.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76295 PF00069 Pkinase 9.60E-12 CL0016 Vvi PK