Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g981 ATGATGAACATTGCGCCTTCATTTCCTCCCACCGCCATCACCACTGAGCAGATTCAGAAGTATCTGGATGAGAACAAACAATTGATTCTGGCAATTCTGGAAAACCAGAACCTTGGAAAACTCGCCGAGTGTGCCCAATATCAAGCCCAGCTTCAGAAGAACTTGATATATCTAGCTGCAATTGCTGATGCCCAACCACCAGCACCAACAGTGCCTCCTCAGATGCCTATACATCATGCCATGCAACAAGGGCATTACATGCAACACCCTCAGGCTGCTGCAGCTCAGCAACAACCAGGCATGTTTGGTGCAAAGTTGCCTTTCCAGCTTAGCGATCAGCAACAGCAGCAGCAGCATCATCTTCTACACCTCCAACAACAGCAACCCATCCAAGGGCTCATGGGCATGAGGCCTATCATCAACAATGGCATGCATCAGGCCATGCAAACTGGGCTTGGTGCTTTGAGCGGTCTCATGGATGTACGTGGAAGCAAGCCAGATGGCTCAGAGGTTGGTTCTGGTGATGGCCAAGGGAAGTCTGCTTCTGGACATGGCAGCATTGTTTCAACCCCACAACAGTTCTTATGA 588 49.83 MMNIAPSFPPTAITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLIYLAAIADAQPPAPTVPPQMPIHHAMQQGHYMQHPQAAAAQQQPGMFGAKLPFQLSDQQQQQQHHLLHLQQQQPIQGLMGMRPIINNGMHQAMQTGLGALSGLMDVRGSKPDGSEVGSGDGQGKSASGHGSIVSTPQQFL* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21365296 21369283 + Vvi16g981 Vvi16g981 778630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g981 195 MobiDBLite consensus disorder prediction 175 195 - -
Vvi16g981 195 PANTHER SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN 6 184 IPR044779 GO:0003713
Vvi16g981 195 PANTHER TRANSCRIPTION FACTOR SSXT FAMILY-RELATED 6 184 - -
Vvi16g981 195 MobiDBLite consensus disorder prediction 158 195 - -
Vvi16g981 195 Pfam SSXT protein (N-terminal region) 12 65 IPR007726 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g981 - - - vvi:100257141 332.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g632 Vvi16g981 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g981 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009570 1 2 1 1 1 0 2 0 0 1 1 0 1 1 1 1 0 3 2 0 1 1 1 1 1 0 1 4 1 2 32