Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g986 ATGGAGAGCAGAGGGTGTTCGGCAGAAGAAGCAGGAGAGGAGGGGGAGCAGCTGACCAGGAAGAAGAGCAGGAACAAGAAGAGGTTCAGTGACGAGCAAGTTCAGTATCTGGAGTCTATTTTCGAGTCGGATAGTAAGCTTGAGGCGAGGAAGAAGGAGGAGCTGGCGGTGGAGCTTGGGATGCAGCCGAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCGAGGTGGAAGTCGAAACAGATAGAGCACGACTACAAAGCACTCAGAGCTAGCTACGATGCTTTAACGTCTCGGTTCGAGTCCTTGAAGGAGGAGAAACAGTCTTTACTCACACAGTTGCAGAAGCTGGGTGATCTGATGGAAAAACCTGGTGATGGGGTGGGAAGCGGTTTCGGAGGAAACAGCAGTACTGATGGGGGATCAGACACCGGAGATGATGCAAAATTGAGCTACTTAGAAGGTGGCCTGGACCACAGATTAGTCAAGTGCTCAGACGATGATAAGAGCCGAAGTGCAGGCTACTTTGGCCACCAAGAAGGGCCTGAGCTTCTCGACAAATGTGAAAATGCAGATATTTCCTTAGAATCAACCGGAAAATGGTTCGGTTTCGCCTCAGGCGGCTTCCATGATCAGTCATGTACCATTTCACAGTTGTGGGACTTCTGGAGTAGTTAA 678 50.0 MESRGCSAEEAGEEGEQLTRKKSRNKKRFSDEQVQYLESIFESDSKLEARKKEELAVELGMQPRQVAIWFQNKRARWKSKQIEHDYKALRASYDALTSRFESLKEEKQSLLTQLQKLGDLMEKPGDGVGSGFGGNSSTDGGSDTGDDAKLSYLEGGLDHRLVKCSDDDKSRSAGYFGHQEGPELLDKCENADISLESTGKWFGFASGGFHDQSCTISQLWDFWSS* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21439500 21441052 + Vvi16g986 Vvi16g986 778635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g986 225 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Vvi16g986 225 SMART HOX_1 22 84 IPR001356 GO:0003677
Vvi16g986 225 MobiDBLite consensus disorder prediction 123 148 - -
Vvi16g986 225 SUPERFAMILY Homeodomain-like 16 81 IPR009057 -
Vvi16g986 225 ProSitePatterns 'Homeobox' domain signature. 55 78 IPR017970 GO:0000981|GO:0006355
Vvi16g986 225 MobiDBLite consensus disorder prediction 1 28 - -
Vvi16g986 225 Coils Coil 86 120 - -
Vvi16g986 225 Gene3D - 15 88 - -
Vvi16g986 225 PRINTS Lambda-repressor HTH signature 51 60 IPR000047 GO:0003677
Vvi16g986 225 PRINTS Lambda-repressor HTH signature 60 76 IPR000047 GO:0003677
Vvi16g986 225 Pfam Homeodomain 24 78 IPR001356 GO:0003677
Vvi16g986 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 224 IPR045224 GO:0003700
Vvi16g986 225 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 224 - -
Vvi16g986 225 CDD homeodomain 24 81 IPR001356 GO:0003677
Vvi16g986 225 Pfam Homeobox associated leucine zipper 80 121 IPR003106 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g986 K09338 HD-ZIP; homeobox-leucine zipper protein - vvi:100252202 413.305
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g240 Vvi16g986 ECH
Vvi15g640 Vvi16g986 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14170 PF00046 Homeodomain 7.10E-18 CL0123 Vvi TF