Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g987 ATGGGGCCACTGACTGTATCTCCAATGGGATTTGGGACATGGGCATGGGGGAATCAGCTTCTCTGGGGGTATCAGGAATCAATGGACAGTGACCTTCAAAGGACTTTCAACCTAGCTGTGGAGAATGGGATCAACCTTTTTGATACTGCTGATTCCTATGGCACTGGTAGGCTAAATGGGCAAAGTGAAAAGCTTCTTGGGAAGTTCATCCGGCAAAAGCAGATACAGGATAACATTGTGATTGCAACAAAGTTTGCAGCATATCCATGGCGTCTCACACCTGGGCAGTTTGTGAATGCGTGCAAGTCTTCCCTTGATCGGATGCAGCTTGAACAAATTGGAATAGGGCAACTGCATTGGTCAACTGCAAACTATGCTCCTTTGCAGGAGTTGGCTCTTTGGGATGGTTTAGTAGCAATGTATGAGAAGGGTTTAGTTCGTGCAGTTGGGGTGAGCAATTATGGCCCAAAGCAGCTTGTAAAGATACACGATTACCTCAAAGCTCGAGGAGTCCCCCTATGCTCAGCTCAGGTTCAATTTTCTTTGCTAAGCAAGGGAGAAGATCAGATAGAGATCAAGAACATATGTGGTTCTCTCGGTATACGCTTGATTTCTTATAGTCCTCTGGGGCTTGGCATGCTTACTGGGAAATATACACCTTCCAAACTTCCACGAGGACCTCGGGCCCTGCTATTCAGGCAAATTCTTCCAGGATTGGAGCCTTTGTTGAATTCACTAAGAGAAATTGCACAAAAAAGGCGTAAAACTATTCCACAAGTTGCCATAAACTGGTGCATCTGCCAAGGCACAATTCCAATACCTGGGGTTAAAACAGTAAAACAGGTGGAAGAAAACCTGGGAGCTCTTGGTTGGCGCCTTAGTTCTGACGAGTTGCTTCAGTTAGAAGATGCGGCGCGGGAATCTCCCGGGAAAATGATACAGAACATTTTCCAGACAAGGTTCTACCTTTTGTCCTTGTCAAACTACAGATGA 993 45.82 MGPLTVSPMGFGTWAWGNQLLWGYQESMDSDLQRTFNLAVENGINLFDTADSYGTGRLNGQSEKLLGKFIRQKQIQDNIVIATKFAAYPWRLTPGQFVNACKSSLDRMQLEQIGIGQLHWSTANYAPLQELALWDGLVAMYEKGLVRAVGVSNYGPKQLVKIHDYLKARGVPLCSAQVQFSLLSKGEDQIEIKNICGSLGIRLISYSPLGLGMLTGKYTPSKLPRGPRALLFRQILPGLEPLLNSLREIAQKRRKTIPQVAINWCICQGTIPIPGVKTVKQVEENLGALGWRLSSDELLQLEDAARESPGKMIQNIFQTRFYLLSLSNYR* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21441799 21447160 + Vvi16g987 Vvi16g987 778636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g987 330 Pfam Aldo/keto reductase family 8 303 IPR023210 -
Vvi16g987 330 PANTHER PYRIDOXAL REDUCTASE, CHLOROPLASTIC 1 312 - -
Vvi16g987 330 Gene3D - 3 309 IPR036812 -
Vvi16g987 330 CDD AKR_AtPLR-like 6 302 - -
Vvi16g987 330 SUPERFAMILY NAD(P)-linked oxidoreductase 4 306 IPR036812 -
Vvi16g987 330 ProSitePatterns Aldo/keto reductase family signature 2. 137 154 IPR018170 GO:0016491
Vvi16g987 330 PRINTS Aldo-keto reductase signature 103 121 IPR020471 GO:0016491
Vvi16g987 330 PRINTS Aldo-keto reductase signature 137 154 IPR020471 GO:0016491
Vvi16g987 330 PRINTS Aldo-keto reductase signature 39 63 IPR020471 GO:0016491
Vvi16g987 330 PANTHER AFLATOXIN B1 ALDEHYDE REDUCTASE 1 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g987 K05275 E1.1.1.65; pyridoxine 4-dehydrogenase [EC:1.1.1.65] - vvi:100258867 642.884
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g987 Blo06g01053 . . . . . . . . . . Cma15g01005 . Car15g00939 . . . . . . . . . . Cla01g00019 Cam01g0018 Cec01g0016 Cco01g0020 Clacu01g0019 Cmu01g0018 Cre09g2489 . . . . . Csa05g00021 . . . . . Bda15g00795 . Bpe12g00339 Bma08g00397 . . . Cmo15g01068 . . . . . Cpe13g00331 Bhi12g00686 . . . . . . . . . . . . . . . . Cme09g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012223 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29