Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g996 ATGGTCCCACTTTTTCAAAGTCAGGAAAACATTTCTGGAAAGATATCTATAGAACCACTTCAGGGAAAGAAGGTTGAACACAATGGTGTGAAAATTGAGCTCCTTGGTCAGATAGAGATGTATTTTGACAGAGGCAACTTCTATGATTTTACCTCCCTTGTTCGTGAACTGGATGTGCCTGGAGAAATATATGAAAGGAAAACATATCCATTTGAATTTTCTACAGTTGAAATGCCATACGAGACGTACAATGGGGTTAATGTGAGGCTTAGGTATGTCCTAAAAGTTACAATCAGTCGTGGCTATGGTGGTAGCATTGTGGAATACCAAGATTTTGTGGTTCGCAACTACACCCCACCTCCGGAAATTAACACTAGTATTAAGATGGAGGTTGGAATTGAAGATTGCCTACACATTGAGTTTGAGTACAATAAAAGCAAGTATCATCTGAAAGATGTTATTATCGGGAAGATATATTTTCTTCTTGTAAGAATCAAGATAAAAAATATGGATCTCGAGATCAGGCGGCGAGAGTCAACAGGATCAGGGGCCAACACCCATGTTGAGACAGAGACACTAGCAAAGTTTGAGTTGATGGATGGTGCTCCAGTAAGAGGTGAATCAATTCCAATTAGACTGTTTCTTAGTCCCTATGAGCTGACACCTACACACCGCAACATTAACAACAAATTCAGCGTCAAATATTATTTGAACCTTGTTCTTGTTGACGAAGAGGACCGTCGGTATTTCAAGCAGCAGGAGATCACAGTATACCGCCTTCCCGAAACTTCTTGA 795 40.25 MVPLFQSQENISGKISIEPLQGKKVEHNGVKIELLGQIEMYFDRGNFYDFTSLVRELDVPGEIYERKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTISRGYGGSIVEYQDFVVRNYTPPPEINTSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGANTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYYLNLVLVDEEDRRYFKQQEITVYRLPETS* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 21532534 21537566 + Vvi16g996 Vvi16g996 778645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g996 264 Gene3D - 120 264 IPR014752 -
Vvi16g996 264 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 1 264 IPR028934 GO:0006886
Vvi16g996 264 SUPERFAMILY E set domains 9 120 IPR014756 -
Vvi16g996 264 Gene3D - 1 118 IPR014752 -
Vvi16g996 264 PANTHER VACUOLAR PROTEIN SORTING 26A-RELATED 1 264 - -
Vvi16g996 264 Pfam Vacuolar protein sorting-associated protein 26 2 246 IPR028934 GO:0006886
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g996 K18466 VPS26A_B; vacuolar protein sorting-associated protein 26A/B - vvi:100250336 532.332
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g996 . . Bda05g00134 Bda07g01949 . . Bma10g01311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004794 3 2 1 1 0 1 2 1 1 1 1 1 1 2 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40