Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g10 ATGATGAAAGAAAGCCCTCTGGGTTTCAAACCAGGGCCATCAATTATCAGACTAGACAGGTTTTTTGTTTTTTTTTGGATTTTTGTGATATATTTCAACGGTAGAAATATAATTAGGAACCGGACCCTCCATTTTCATACCAACGAGAACATCTTTGAGGAGGCCGCCGTCCTCCATACTCCTCACTTCACCGTCGCCGGAGCCCAAGCCACCTCCACCTTCAAGCTCCGTCGCCGCCCTTTTTCACAGCCCACCCTCAGAATGGCTGAGGAAGAACAAGAAATTAAAAGGACATCTCATTCAGAGGAAGGAGAGTCTGAAGGCAATGATGAAAAGGGGAGAATTCGGAAAAATAAACTAAAGAAGCGGCTGTTGAAGGAAGCTTCTAAGGCTGATAAGCGTGGGGTTTGCTACTTGAGTCGGATTCCCCCTCACATGGATCATGTGAAGCTTCGTCATATACTTTCCCAGTATGGAGAAATCCAAAGGATTTATCTTGCTCCAGAAGACCCTGCAACTCAAGTACATCGCAAACGGGCTGGTGGGTTTCGAGGACAAGTATTTTCAGAAGGGTGGGTTGAATTTACCAAGAAAACTGTTGCTAAGAGGGTGGCCAAGATGTTAAATGGTGAACAAATAGGTGGGAGGAAGAGATCATCATTCTATTATGACCTTTGGAATATCAAGTACTTGAGCAAATTCAAGTGGGACGATCTTACAGAAGAGATTGCTTACAAGAATGCCATTCGAGAGCAGAAACTAGCTTTGGAACTTTCTGCTGCTAAGCGGGAGCGTGACTTCTACCTCTCTAAAGTTGACAAGTCTCGTGCCTTGAGTTCTATAGAAGAACGACTAAAGAAGAAGCAAAAGGTCCAACAAGATGCAGGAACAAACACTGAGGCCCCTGCTAATGATCAAGGACCAAAGGTGATCCGCCAATTCCCCCAGAAACCACCACTTGCAGATAAAGCAGCAGAAAGCAAGCCGAGACTCTCCAAAGACATCCTAGCAGGGGTGTTTGGGGGTTCGTCATGA 1035 45.41 MMKESPLGFKPGPSIIRLDRFFVFFWIFVIYFNGRNIIRNRTLHFHTNENIFEEAAVLHTPHFTVAGAQATSTFKLRRRPFSQPTLRMAEEEQEIKRTSHSEEGESEGNDEKGRIRKNKLKKRLLKEASKADKRGVCYLSRIPPHMDHVKLRHILSQYGEIQRIYLAPEDPATQVHRKRAGGFRGQVFSEGWVEFTKKTVAKRVAKMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEEIAYKNAIREQKLALELSAAKRERDFYLSKVDKSRALSSIEERLKKKQKVQQDAGTNTEAPANDQGPKVIRQFPQKPPLADKAAESKPRLSKDILAGVFGGSS* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 55860 62009 + Vvi17g10 Vvi17g10 778707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g10 344 MobiDBLite consensus disorder prediction 288 329 - -
Vvi17g10 344 MobiDBLite consensus disorder prediction 83 119 - -
Vvi17g10 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 217 IPR000504 GO:0003723
Vvi17g10 344 SUPERFAMILY RNA-binding domain, RBD 126 217 IPR035979 GO:0003676
Vvi17g10 344 PANTHER ACTIVATOR OF BASAL TRANSCRIPTION 1 90 340 IPR039119 -
Vvi17g10 344 CDD RRM_ABT1_like 135 232 IPR034353 -
Vvi17g10 344 MobiDBLite consensus disorder prediction 89 115 - -
Vvi17g10 344 Gene3D - 83 220 IPR012677 -
Vvi17g10 344 PANTHER ACTIVATOR OF BASAL TRANSCRIPTION 1 90 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g10 K14785 ESF2, ABT1; ESF2/ABP1 family protein - vvi:100259435 498.819
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g10 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .