Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g100 ATGTGGAGGCCATTTTTCCAGCCATACCATCTGATAATCGTACAGGACGGAGATCCGACGAAGACGATTCGGGTTCCGGAGGGGTTCGACTACGAGCTCTACAACCGGAACGACGTGAATCGGATCCTGGGACCCAAGGCAAGCTGTATCTCCTTCAAGGACTCCGCTTGTCGCTGCTTCGGCTTCCTCGTTTCCAAGAAGAAGTACATCTTCACCATTGATGATGACTGCTTTGTGGCTAAGGATCCGAGTGGGAAGGAGATAAATGCATTGGCGCAGCACATACAGAACTTGCTGACACCGTCGACTCCCTTCTTCTTCAACACCCTGTATGATCCTTTCAGGGAAGGAGCTGATTTTGTTCGGGGATACCCATTTAGCTTGAGGGAAGGAGCCCCAACTGCTATATCTCATGGGCTGTGGCTCAACATCCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTCGAGCGCAACACCAGGTATGTGGATGCTGTTATGACCATCCCAAAAGGAACTCTATTTCCAATGTGTGGCATGAACCTTGGATTCGACCGGGAACTCATAGGTCCTGCTATGTACTTTGGGCTTATGGGTGATGGCCAACCAATTGGCAGATACGACGATATGTGGGCTGGATGGTGTGCGAAGGTGATCTGTGACCATATGAGTCTTGGTGTGAAAACTGGGCTGCCATACATTTGGCACAGTAAGGCGAGCAACCCATTTGTCAATTTGAAGAAAGAATACAAAGGAATATACTGGCAAGAAGACATCATCCCATTCTTCCAATCTGTTGTCTTCCCAAAAGAATGCATAACTGTGCAGCAATGCTACATTGAGCTTTCTAAGCAGGTCAAGGAGAAGCTGGGGCATGTTGATCCTTACTTCCAGAAACTCGCAGATTCCATGGTTACGTGGATTGAAGCCTGGGAGGAGCTAAACCCTCCAACAAAAGCAGCACCTGCAGCTCAGCCCAATGGTGTTAAGAAGGATGCACCGGCTCCCAAACCCAAGTAG 1023 49.17 MWRPFFQPYHLIIVQDGDPTKTIRVPEGFDYELYNRNDVNRILGPKASCISFKDSACRCFGFLVSKKKYIFTIDDDCFVAKDPSGKEINALAQHIQNLLTPSTPFFFNTLYDPFREGADFVRGYPFSLREGAPTAISHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLGFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVICDHMSLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEDIIPFFQSVVFPKECITVQQCYIELSKQVKEKLGHVDPYFQKLADSMVTWIEAWEELNPPTKAAPAAQPNGVKKDAPAPKPK* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 928685 931518 - Vvi17g100 Vvi17g100 778797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g100 340 MobiDBLite consensus disorder prediction 319 340 - -
Vvi17g100 340 PIRSF UPTG 1 320 IPR004901 GO:0016866|GO:0071669
Vvi17g100 340 PANTHER UDP-ARABINOPYRANOSE MUTASE 3 1 329 - -
Vvi17g100 340 PANTHER UDP-ARABINOSE MUTASE 1 329 IPR037595 -
Vvi17g100 340 Pfam Reversibly glycosylated polypeptide 1 316 IPR037595 -
Vvi17g100 340 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 217 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g100 K13379 RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] - vvi:100250902 704.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0489 Cone16ag0516 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000316 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4 4 140