Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1000 ATGGCGGATGCGTTTTGCACCGATTGTAAGAAGAACACCGAGGTCGTGTTCGATCACTCGGCGGGCGACACGGTGTGTTCCGAGTGCGGGCTTGTGCTGGAGTCTCACTCGATTGATGAGACCTCCGAGTGGAGAACGTTCGCGAACGAGTCCGGCGACAATGACCCGGTCCGTGTTGGCGGCCCATCTAACCCGCTTCTCACCGACGGTGGCCTTTCGACCGTTATAGCGAAGCCGAACGGGGTTTCGGGAGATTTCTTGTCGAGTTCGCTAGGGCGGTGGCAGAATCGGGGGTCGAATCCGGATCGGGGTCTGATTCTGGCTTTCAAGACCATCGCGACTATGTCTGATAGGTTGGGCCTTGTTGCGACCATAAAGGACCGTGCTAATGAAATATATAAGAAGGTAGAAGATCAAAAGTCTACTAGAGGAAGAAATCAAGATGCTCTGTTGGCTGCCTGTCTCTATATTGCTTGTCGACAAGAAGACAAACCGCGCACTGTAAAGGAAATTTGCTCTGTTGCCAATGGAGCCACAAAGAAAGAAATTGGCCGAGCAAAAGAATACATAGTGAAACAACTGGAGGCTGAGAAGGGCCAATCGGTAGAGATGGGAACCATACATGCTGGAGACTTTATGAGGAGATTTTGTTCCAATCTTGGGATGACCAATCAAGTGGTTAAAGCTGCCCAAGAAGCTGTGCAGAAGTCTGAAGAGTTTGATATAAGGAGGAGCCCTGTATCAATTGCAGCAGCAGTTATTTACATTATAACCCAGCTTTCAGATGAGAAGAAGCTTCTCCGAGATATCTCAATAGCTACGGGAGTTGCAGAAGGAACAATCAGAAACTCGTACAAGGATCTCTATCCCCATATCTCAAGGATAATACCAAGCTGGTATGCCAAGGAGGAGGATCTCCGAAATCTTTGCAGCCCTTAA 939 48.99 MADAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPSNPLLTDGGLSTVIAKPNGVSGDFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSTRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLEAEKGQSVEMGTIHAGDFMRRFCSNLGMTNQVVKAAQEAVQKSEEFDIRRSPVSIAAAVIYIITQLSDEKKLLRDISIATGVAEGTIRNSYKDLYPHISRIIPSWYAKEEDLRNLCSP* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 16976053 16982389 - Vvi17g1000 Vvi17g1000 779697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1000 312 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Vvi17g1000 312 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Vvi17g1000 312 Pfam Transcription factor TFIIB repeat 204 290 IPR013150 GO:0017025
Vvi17g1000 312 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Vvi17g1000 312 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Vvi17g1000 312 SUPERFAMILY Cyclin-like 105 195 IPR036915 -
Vvi17g1000 312 Gene3D - 208 311 - -
Vvi17g1000 312 SUPERFAMILY Cyclin-like 207 308 IPR036915 -
Vvi17g1000 312 CDD CYCLIN 104 185 IPR013763 -
Vvi17g1000 312 Gene3D - 5 194 - -
Vvi17g1000 312 SMART cyclin_7 110 192 IPR013763 -
Vvi17g1000 312 SMART cyclin_7 211 290 IPR013763 -
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 212 230 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 244 260 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PRINTS Transcription initiation factor IIB signature 276 290 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 312 IPR000812 GO:0006352|GO:0070897
Vvi17g1000 312 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 3 312 - -
Vvi17g1000 312 CDD CYCLIN 207 289 IPR013763 -
Vvi17g1000 312 SUPERFAMILY Zinc beta-ribbon 4 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1000 K03124 TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB - vvi:100266630 623.624
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g1000 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .