Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1003 ATGAAGAAGAATGTTGGAGAGTTGGGTCTAAAATTCTTCTTGAAAATATTTGAGATTGCTCCATTAACTCAAAAACTGTTCTCATTCCTGAAAGACTCAAAGGTTCCTTTAGATAAGAACCCAAAGCTCAAGTCCCATGCCATGACTTTTTTTTATTTTTTATTTTTATTTTTTATGGTTGTTTACTCTTCCCCCCTACCTCCAAATGGGTTATTAAAGATGACCATATACAAAATTTGA 240 32.5 MKKNVGELGLKFFLKIFEIAPLTQKLFSFLKDSKVPLDKNPKLKSHAMTFFYFLFLFFMVVYSSPLPPNGLLKMTIYKI* 80
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 17031732 17034212 + Vvi17g1003 Vvi17g1003 779700

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1003 79 SUPERFAMILY Globin-like 1 56 IPR009050 -
Vvi17g1003 79 PANTHER HEMOGLOBIN 1, GLB1,NSHB1,ATGLB1,HB1 1 52 - -
Vvi17g1003 79 Gene3D Globins 1 57 IPR012292 GO:0019825|GO:0020037
Vvi17g1003 79 ProSiteProfiles Globin family profile. 1 51 IPR000971 GO:0020037
Vvi17g1003 79 PANTHER LEGHEMOGLOBIN-RELATED 1 52 IPR001032 GO:0019825|GO:0020037
Vvi17g1003 79 Pfam Globin 11 54 IPR000971 GO:0020037
Vvi17g1003 79 ProSitePatterns Plant hemoglobins signature. 40 51 IPR019824 GO:0019825|GO:0020037
Vvi17g1003 79 PRINTS Plant globin signature 12 32 - -
Vvi17g1003 79 PRINTS Plant globin signature 40 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1003 - - - vvi:100853737 91.2781
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g1003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .