Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1006 ATGGAGAAGTTAAAATTGGAGATCTGGGTTTGGCAATTGTCATGTAGTAACCTACTGCACGAAGCCTCAACAATTGGTACTCCAGAGTTCATGGCACCAGAGCTTTATGAAGAGGAATATAATGAACTTGTTGACATATATTCTTTTGGCATGTGCATATTAGAGTTGATTACATGTGAATACCCATATAATGAATACAAAAATCCTGCACAAATATATAAGAAGGTTTCTTCGGGTATAAAGCCTGCTCCCCTTGGTAAAGTGAGTGACCCCCAAGTTAAGTACTTCATAGAGAAGCGTTTGGTTCCAGCATCCTTGAGATTGCCTGTACAAGTGCTCTTAAAGGACGCATTCTTTGCCACAAAAAATTCGAAGGAGCCTGTTTACAATCACATGCAGTTATTCAATTCTACGCACAACTCATTTAACTTGCCAGAATCTCAATCCCATGGCATGGACCCGGACCCTAAGGTTGATGGGCTTTTAGTGAGCACTCATAATGAAAAGCATCAGTACTTGATCCTTGTTCTTTTCCTTGTGATCTTTCACCTTTAA 555 39.82 MEKLKLEIWVWQLSCSNLLHEASTIGTPEFMAPELYEEEYNELVDIYSFGMCILELITCEYPYNEYKNPAQIYKKVSSGIKPAPLGKVSDPQVKYFIEKRLVPASLRLPVQVLLKDAFFATKNSKEPVYNHMQLFNSTHNSFNLPESQSHGMDPDPKVDGLLVSTHNEKHQYLILVLFLVIFHL* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 17077435 17089089 + Vvi17g1006 Vvi17g1006 779703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1006 184 SUPERFAMILY Protein kinase-like (PK-like) 21 143 IPR011009 -
Vvi17g1006 184 Gene3D Transferase(Phosphotransferase) domain 1 6 126 - -
Vvi17g1006 184 PANTHER WNK KINASE 22 142 - -
Vvi17g1006 184 Pfam Protein kinase domain 22 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g1006 184 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 22 142 - -
Vvi17g1006 184 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76297 PF00069 Pkinase 9.60E-08 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1006 K08867 - vvi:100246117 261.922