Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g102 ATGTGGGCAGCTCAATGGTACAAGTATAGGAGGCCTCGGCAGTGGCCGATGTCAAGCTGTTTAGGGGCAGTGGGCTTTGAACTCCCTGCTGCCATTGGAGCCGCTGTTGCCAGACCTGAAGCTTTAGTCATCGACTTCAACAGTGATGGGAGTTTCATGATGAATGTTCAGGGGCTGGCAACAGTCCAGGTGGAGAACCTCCCTGTTAAGATGATGATACTGAACGATCAGTATCTGGGTATGGCTGCTCAGTGGGGGGATCTTTTCTATAAGGCTAATAGGGCTTACACAAACCTGGGAAACCCAGTAAAAAGGTCTGAAATTTTCCCGACTATGATGAGGTTTGCTGAAGCTTGTGACATCCATGCAGCCCGGGTAGAGAAGAAGAGTGATATTAGGACAGCAATTCAGAAGATGTTATACACACCCTGGACGTAA 438 48.63 MWAAQWYKYRRPRQWPMSSCLGAVGFELPAAIGAAVARPEALVIDFNSDGSFMMNVQGLATVQVENLPVKMMILNDQYLGMAAQWGDLFYKANRAYTNLGNPVKRSEIFPTMMRFAEACDIHAARVEKKSDIRTAIQKMLYTPWT* 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 942498 942936 + Vvi17g102 Vvi17g102 778799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g102 145 Gene3D - 1 141 - -
Vvi17g102 145 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 1 140 IPR011766 GO:0003824|GO:0030976
Vvi17g102 145 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1 142 IPR029061 -
Vvi17g102 145 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 1 143 IPR045229 -
Vvi17g102 145 PANTHER ACETOLACTATE SYNTHASE 1 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g102 K01652 E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] - vvi:100243927 295.049
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018024 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4