Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g109 ATGCCTATGACTGGAGAAAAACCAGAGGAAGTAAAACCACTAGTGGTGGAAGGTGATGATGACGGAGAAGAAGAAGAGGAAGAGGATTCGTGGTCATCGGATTCCGAAATCGGAGAAGCCCTAGACTGGTTGGACACGAAAGATGGCAGTGAAGTTGGCGTGGATGGACCGATTAGTCTAAATTCGAGGCGTCCAAATGCTCATGGAGGGCTTCACTCTCGCATTAATGCATCGACGCTACAACCTCTCTCGAACCGGAACCAGAAGTTCTCCAATCACATCCATGCTTCACCATTGGAGGAGTGGGAGGGGAGGTTGAATGTTGGCATGTCAAACTCTGTGACAACTGCCATTCGTGAAAGTGTTCGAGGGATGGCCATTGGTAAAACTAAAACCACCGAGAAAGCAGACCGTGCAACTGTTGAACAGGCTATTGATCCTAGAACTCGCATGGTTTTATTCAAAATGCTGAATCGAGGTGTGTTCCATGATATTAACGGCTGCATTTCAACTGGAAAAGAAGCAAATGTTTATCATGCCACAAAATCCGATGGTCACGAACTTGCAATTAAAGTGTACAAAACTTCTGTTCTAGTATTTAAGGATAGAGATCGGTATGTACAAGGAGACTACCGTTTCAGACATGGATACTGCAAGCACAATCCTAGGAAAATGGTAAAGACATGGGCTGAGAAAGAAATGAGAAATCTTTTGAGGCTAAAGGCAGCAGGAATCAGGTGCCCAACTCCGTACCTATTGAGGCTTCATGTTTTAGTCATGGAATTCATAGGAAAGGCAGGTTGGGCTGCACCTCGTCTTAAGGATGCTGCTTTATCTCTTGACAAATTGCGTGAAGGTTATGTGGAGATGATTATGGCAATGCGGACGTTATATCAGAAGTGCAAACTGGTACATGGAGACCTCAGTGAATATAACATACTTTATTTTGAGGGCCACTTACATGTTATTGATGTTTCTCAAGCAGTTGATCTTGACCATCCTCATGCCCTTGACTTTCTACGTGAAGATTGTGTCCATGTTTCTGATTTTTTTAAAAAACATGGTGTAGCTGTTATGACAATTCGAGAACTGTTTGATTTCATAGTTGATCCAACCATTACTGATGAGTCAGTGGATGATTATCTGGAACAGGTTCAACAAAAGATTTTGGCAAGAGAGATATCTCCAGAGGATGAGATTGCAGATTCTGTATTTGTACAGTCTTTTATTCCCAAGGCACTAGAAGATGTGAAGAATGCCGAGCAGGATGTAATCCGGCTAACAAGTGGCAAGGACACTACAGACATGTACTATAAAACTATTACAGGACTCAAACAAGCTCTTTCTCTATCTCAACCTTCTCCTCCACAAACCGAGCCGCCCCTTAAAGAAAACTCCTCTCTGGATCCAACTGCTCATTCTAACTCAGGCGAAGACATAATAGAATCTGGGACAGATGGGGATGAAGAGAACTCAAGTGACACAGACAGTGGTTCCTCGTCTGAAATCGAGACACAGACCCCCACCGATAAGAAAGCTGCCCGAAAAGAGAACAAGAAGAAGGTGAAAGAAGAGAAGAGGGAAGCCCGGAAGACCAAGGTGCCAAAGGCAGTGAAGAAACGAAAGAAGAAACTGGCCAAAGCTCACAAGACCAGAAATCAAATCAGCGGGGGGCCGAAAATTTCCCGAGTGACATCCGTTGCGACAATGTCAGATTCCATGTCTCCCTCGCAAAATCAAAACCCTAATCACAAAGACTCGGAAGCAGTGGCTCGAGCTTGGCTCGCCACCATTCCTGAGGAGGTCAAAACCCTAACCATGGCGGAGTTCGAATCTTGGGTTCACTCCAACAACGCCTCTTTACCCCACGAAATCAGATCAATGCCTCCATCACAGCTCTATGAAATCCTTACTCAGAACTCTATGCCAACTCAGGAAAAAGATACTAATCCAGGCGATAATCCTGCCCGATTTCAACGTACTGATCAATGGATTCCGGTTTATGCATGGTTAGAGTTATTGGACAAAGATGAGGTGGTTAAGTCCAAAGATATTTCTGACTGGCTAACTGAGAATCCCACAGTCAGAGAACAGTTGTGCTCGAGGCATTCTCGTTACCATTTGATGCACTACATTAAAAAATGTCATTTGAAGATACTCAAGAGGAGGGAGAAAAAGAAGGGTTTGGATCAAGCCAGCAAAGCAACACCTTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCGAAATGAAGCTTTGCGAAAATTTGAGATTTTAGTAGAATTGGAGAAGCAGCTTTCAACCCTCTTCCCAAAGCAATGA 2388 44.01 MPMTGEKPEEVKPLVVEGDDDGEEEEEEDSWSSDSEIGEALDWLDTKDGSEVGVDGPISLNSRRPNAHGGLHSRINASTLQPLSNRNQKFSNHIHASPLEEWEGRLNVGMSNSVTTAIRESVRGMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGHELAIKVYKTSVLVFKDRDRYVQGDYRFRHGYCKHNPRKMVKTWAEKEMRNLLRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAPRLKDAALSLDKLREGYVEMIMAMRTLYQKCKLVHGDLSEYNILYFEGHLHVIDVSQAVDLDHPHALDFLREDCVHVSDFFKKHGVAVMTIRELFDFIVDPTITDESVDDYLEQVQQKILAREISPEDEIADSVFVQSFIPKALEDVKNAEQDVIRLTSGKDTTDMYYKTITGLKQALSLSQPSPPQTEPPLKENSSLDPTAHSNSGEDIIESGTDGDEENSSDTDSGSSSEIETQTPTDKKAARKENKKKVKEEKREARKTKVPKAVKKRKKKLAKAHKTRNQISGGPKISRVTSVATMSDSMSPSQNQNPNHKDSEAVARAWLATIPEEVKTLTMAEFESWVHSNNASLPHEIRSMPPSQLYEILTQNSMPTQEKDTNPGDNPARFQRTDQWIPVYAWLELLDKDEVVKSKDISDWLTENPTVREQLCSRHSRYHLMHYIKKCHLKILKRREKKKGLDQASKATPLKVQKTVVTKPPTALPWNSPSNLPKDNDAYLAKRNEALRKFEILVELEKQLSTLFPKQ* 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 979961 990944 + Vvi17g109 Vvi17g109 778806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g109 795 MobiDBLite consensus disorder prediction 555 586 - -
Vvi17g109 795 MobiDBLite consensus disorder prediction 461 481 - -
Vvi17g109 795 Coils Coil 512 532 - -
Vvi17g109 795 MobiDBLite consensus disorder prediction 1 69 - -
Vvi17g109 795 CDD RIO1_euk 165 354 - -
Vvi17g109 795 MobiDBLite consensus disorder prediction 16 35 - -
Vvi17g109 795 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 17 548 - -
Vvi17g109 795 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 303 314 IPR018935 GO:0004674|GO:0005524
Vvi17g109 795 Pfam RIO1 family 176 363 - -
Vvi17g109 795 Gene3D Phosphorylase Kinase; domain 1 162 264 - -
Vvi17g109 795 SUPERFAMILY Protein kinase-like (PK-like) 165 351 IPR011009 -
Vvi17g109 795 Gene3D Transferase(Phosphotransferase) domain 1 270 410 - -
Vvi17g109 795 MobiDBLite consensus disorder prediction 448 587 - -
Vvi17g109 795 MobiDBLite consensus disorder prediction 533 550 - -
Vvi17g109 795 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 17 548 - -
Vvi17g109 795 MobiDBLite consensus disorder prediction 508 532 - -
Vvi17g109 795 SMART rio_2 134 370 IPR000687 GO:0004674|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g109 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] - vvi:100244003 995.727
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g109 . . . . . . . . . Cmo18g00217 . . . . . . . . . . . . . . . . . . . . . Cone2ag0974 . . . Lsi02g00501 Csa01g00962 Chy12g01600 Cme12g01778 . . . Bda14g01363 . Bpe15g00218 . . . . . . Cma18g00109 . Car18g00100 Cpe09g01082 . . . . . . . . . . . . . . . . Csa01g00489 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34