Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g11 ATGGAGGCCAAAAGGCTGTGCTCTCAAGCAGGGCGGTGGCGTCAGATGCACCCCGCCGCACCCATCTTATCTGCTAATTCCTACTTGGTCCACCCCACAAATTCACTCAATTCTTCACCCTCCTCTACAATCCCAGATCATCAAAAGCTGAACTGTATTCTTGAAGCCTGCAAATTCTCCTCAGATTTCAGAACTGCATTTCAGAGCCACGCTAAAATCATAAAATTTGGATATGGTACGTACCCATCCCTTATAACCTCTCTCGTATCAACATATGCGCATTGTGATTGCCTGGATCTTGCTCATCAACTTCTTGATGAAATGCCCTATTGGGGTTTTGATTTGATCACTGCAAATTTAATAATAGCAAGCTTGATGAAAGTTGGAGAGTTTGACTTTGCCAAGAGGGTATTCCGTAAAATGCTCCGTCGAGATGTGGTTACATGGAACTCAATGATTGGAGGCTGTGTTAGAAATGAACGGTTTGAGGAGGCTCTTAGATTCTTTCGAGAAATGCTGAACTCGAATGTTGAACCGGATGGGTTTACGTTTGCATCCGTTATTAATGGCTGTGCACGACTTGGATCTTCTCATCATGCTGAGTTGGTGCATGGTTTAATGATTGAGAAGAAGATTCAACTGAACTTTATATTGAGTTCGGCATTAATAGATCTGTACTCAAAATGTGGAAGAATCAATACTGCAAAAAAAGTTTTTAATAGCATTCAGCATGATGATGTGTCTGTCTGGAATTCAATGATTAATGGCCTAGCAATTCATGGGCTTGCTTTGGATGCAATTGGAGTATTCTCACAAATGGAGATGGAAAGTGTTTCACCTGATTCTATAACCTTCATTGGAATTTTAACAGCATGTAGCCATTGTGGTTTGGTTGAACAAGGTCGCAGGTATTTTGATCTAATGAGAAGGCATTACTCAATTCAGCCACAGCTTGAGCATTATGGAGCCATGGTTGACCTTCTGGGTCGAGCTGGGTTGGTCGAAGAAGCTTATGCAATGATTAAGGCAATGCCAATGGAGCCAGATATTGTCATATGGAGGGCGCTTCTTAAAATGGGATTCCGCAGAAAGAGTGAGAGAAATGATGAAAAGAGATGGAGTTCGTAA 1128 41.93 MEAKRLCSQAGRWRQMHPAAPILSANSYLVHPTNSLNSSPSSTIPDHQKLNCILEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLKMGFRRKSERNDEKRWSS* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 68009 69620 - Vvi17g11 Vvi17g11 778708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g11 375 Pfam PPR repeat family 144 193 IPR002885 -
Vvi17g11 375 Pfam PPR repeat family 246 293 IPR002885 -
Vvi17g11 375 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Vvi17g11 375 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 358 - -
Vvi17g11 375 Gene3D Tetratricopeptide repeat domain 145 218 IPR011990 GO:0005515
Vvi17g11 375 Gene3D Tetratricopeptide repeat domain 37 144 IPR011990 GO:0005515
Vvi17g11 375 Gene3D Tetratricopeptide repeat domain 221 374 IPR011990 GO:0005515
Vvi17g11 375 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 144 IPR002885 -
Vvi17g11 375 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi17g11 375 TIGRFAM PPR: pentatricopeptide repeat domain 182 215 IPR002885 -
Vvi17g11 375 TIGRFAM PPR: pentatricopeptide repeat domain 147 180 IPR002885 -
Vvi17g11 375 TIGRFAM PPR: pentatricopeptide repeat domain 249 282 IPR002885 -
Vvi17g11 375 TIGRFAM PPR: pentatricopeptide repeat domain 117 147 IPR002885 -
Vvi17g11 375 Pfam PPR repeat 86 112 IPR002885 -
Vvi17g11 375 Pfam PPR repeat 320 345 IPR002885 -
Vvi17g11 375 Pfam PPR repeat 220 244 IPR002885 -
Vvi17g11 375 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Vvi17g11 375 PANTHER OS07G0578800 PROTEIN-RELATED 38 358 IPR045215 GO:0003723|GO:0009451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g11 - - - vvi:100247459 701.434
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27