Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g110 ATGGTGGGTGTGCAGAGAATGTGGGGTGTGGTGTTTTGGACTGTGTTAAACTTCTTCTTCTCTGGTTTGGTTGATGGGTTTGTTTTAGGGGAGCAGCCACTATCGAAAATTGCTATCCACAGGATCACTCTTGGCCTTAGTAATTCGACTTCCATTAGAGCTTCTCCGATCCTCCTCGGCTCCAATGGTGAGGATACTGAATGGGTGAGTGTTGATCTTGAGCATGATAATCCATCCGTTGGTGACTGGATTGGGGTTTTTTCTCCTGCAAACTTCAACTCATCCACCTGTTCGCCGGAAAGCTCAGAATCAAAAGACCAGGCTCCATATATATGCTCAGCCCCAATTAAGTATAAGTTTGTGAAAGACACCGACTCAGGTTATACAAAGACAGGGAAAGCTTCTTTGAAGTTCCAAATAATCAATCAGCGGGCAGATTTCTCCTTTGTGTTATTTTCAGGCGGGTTGTCAAAACCAAAACTGGTGGCAGTTTCGAACTCTGTATCATTTGCAAATCCTAAAGCCCCCCTTTATCCACGCCTTGCTCTGGGAAAGGCTTGGAATGAAATGGCAGTGACATGGACAAGTGGCTATAACATAGATGAAGCCGTTCCATTTGTTGAATGGGGTCTAAAGGGAGGACATCATAAGCGCTCGCCAGCTGGAACATTGACATTTCACCAGAACAGCATGTGTGGTTCACCGGCACATACGGTTGGATGGCGTGATCCAGGTTTCATACACACAAGTTTCTTAAAGGATTTATGGCCAAATGCAAGGTACAATTACAGGATGGGTCATCTCTTGTCCAATGGCTCTTATGTCTGGAGCAGGTCTTATTCATTCAGATCATCCCCATTTCCTGGACAGGACTCTTTACAGCGAGTTATAATATTTGGCGACTTGGGAAAGGCAGAGCGTGATGGTTCAAATGAATATAGTAACTATCAGCCGGGTTCACTCAACACGACAGATCAACTCATAAAGGACTTGCCCAACTTTGACATAGTTTTCCATATAGGAGACTTAACATATTCAAATGGGTACCTCTCGCAATGGGATCAGTTCACTTCACAGGTGGAGCCAATGGCGTCAACTGTACCATATATGGTTGCTAGTGGTAATCATGAACGTGATTGGCCAAATTCGGGATCCTATTATGATGGGACGGACTCTGGTGGGGAATGTGGTGTGCCAGCTGAGACTACATTCTATTTTCCTGCGAAGAACAGATCTAAGTTTTGGTACTCGGCAGACTATGGCATGTTTCATTTTTGTGTAGCGGACACCGAAAATGACTGGCGGAAGGGAACCGAACAGTACAGGTTCCTTGAGCATTGTCTTGCATCAGTGGACAGGAGGAAACAGCCTTGGTTGATCTTTACTGGTCATCGGGTCCTTGGGTACTCCTCTGAATTTTGGTATGCCTTGGAGGGATCATATGCAGAGCCCGGGGGAAGGAAGAGCTTGCAGAAGCTTTGGCAGAAGTACAAGGTGGATATTGCATTATTTGGCCATGTCCACAACTATGAAAGAATATGCCCTATTTACCAGAATCGGTGTGTGAACCCTGAAAAATCTCACTACTCTGGCACAGTGAATGGGACTATCCATATCGTGGTTGGAGGGGGAGGGAGCCACTTATCCGAGTTCGCTGATGAGGTACCCAGTTGGAGTATTTACAGAGATTACGACTATGGATTTGTCAAAATGACAGCGTTCAACCACTCATCTCTTCTATTTGAGTACAAGAAGAGCAGTGATGGGAAGGTATATGATTCTTTCACAATCTCAAGGGACTAG 1803 45.26 MVGVQRMWGVVFWTVLNFFFSGLVDGFVLGEQPLSKIAIHRITLGLSNSTSIRASPILLGSNGEDTEWVSVDLEHDNPSVGDWIGVFSPANFNSSTCSPESSESKDQAPYICSAPIKYKFVKDTDSGYTKTGKASLKFQIINQRADFSFVLFSGGLSKPKLVAVSNSVSFANPKAPLYPRLALGKAWNEMAVTWTSGYNIDEAVPFVEWGLKGGHHKRSPAGTLTFHQNSMCGSPAHTVGWRDPGFIHTSFLKDLWPNARYNYRMGHLLSNGSYVWSRSYSFRSSPFPGQDSLQRVIIFGDLGKAERDGSNEYSNYQPGSLNTTDQLIKDLPNFDIVFHIGDLTYSNGYLSQWDQFTSQVEPMASTVPYMVASGNHERDWPNSGSYYDGTDSGGECGVPAETTFYFPAKNRSKFWYSADYGMFHFCVADTENDWRKGTEQYRFLEHCLASVDRRKQPWLIFTGHRVLGYSSEFWYALEGSYAEPGGRKSLQKLWQKYKVDIALFGHVHNYERICPIYQNRCVNPEKSHYSGTVNGTIHIVVGGGGSHLSEFADEVPSWSIYRDYDYGFVKMTAFNHSSLLFEYKKSSDGKVYDSFTISRD* 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 992519 998342 + Vvi17g110 Vvi17g110 778807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g110 600 Pfam Iron/zinc purple acid phosphatase-like protein C 535 594 IPR025733 -
Vvi17g110 600 Pfam Fn3-like domain from Purple Acid Phosphatase 52 172 IPR040974 -
Vvi17g110 600 Gene3D - 289 600 IPR029052 -
Vvi17g110 600 PANTHER PURPLE ACID PHOSPHATASE 25 600 - -
Vvi17g110 600 Pfam Purple acid Phosphatase, N-terminal domain 180 283 IPR015914 GO:0003993|GO:0046872
Vvi17g110 600 PANTHER PURPLE ACID PHOSPHATASE-RELATED 25 600 - -
Vvi17g110 600 Gene3D - 175 288 - -
Vvi17g110 600 SUPERFAMILY Metallo-dependent phosphatases 290 599 IPR029052 -
Vvi17g110 600 SUPERFAMILY Purple acid phosphatase, N-terminal domain 154 286 IPR008963 GO:0003993|GO:0046872
Vvi17g110 600 Pfam Calcineurin-like phosphoesterase 295 510 IPR004843 GO:0016787
Vvi17g110 600 CDD MPP_PAPs 294 599 IPR041792 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g110 K22390 ACP7; acid phosphatase type 7 - vvi:100252448 1202.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g110 . . . . . . . . . . . . . . . . . Bhi02g00517 . . . . . . . . . . . . . . Cone16ag0017 . . . . . . . . . . . Bpe15g00217 . Bma08g00130 . Cmo10g00057 . . . . . . Cpe18g00903 . . . . . . . . . . . . . . . . . Cme02g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007476 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 1 1 2 36