Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g114 ATGGATATCCCGCTGTCTCGTAATCAGAACATGTCAATGGATCAGATCCAGAGTAACTGTGGCTTGCCGCATTTGTTCTCAGTTGACGAGATTCTGAGAGAAAAGTCCTTTTCTCAGCGTTTGCTTCCATTCAACAGAAGAAAACGGAGGACCCCATTTTCTCAGATCAGGTGTTCTTCCTTGGAACAAGGTCTGCAACCACGGCCCAAGCCGAAACCTTCGACTATTGAGCTGAATGTGGGAAAAGAAGCTCAAGTAAATGAAACACAACTCAGGAAACCCAGTTCAGAGCTATGTGGTCAGATCGAGAAATTAGTTTTCTTTAAGAGGTACCATGAGGCACTTGAATTATTTGAAATTTTAGAGTTGAATGGTGCTTATGATATGGATAGCGAGACATATGATGCATTAGTGAGTGCGTGTATTGGGTTGAAATCAATTAGAGGGGTGAAAAAGGTGTTCAATTATATGATTAATAGTGGGCTTGATCCGGATGAGTATTTGAGGAACAGGGTTTTGTTAATGCATGTGAAATGTGGGATGATGATTGATGCACGTAGATTGTTTGATGAAATGCCAGAAAAGAACATTTTGTCCTGGAATACGATAATTGGGGGACTTGTGGATGCTGGAGATTATTTCGAGGCATTCCGGTTGTTTCTAATGATGTGGCAGGATTTTTCTGATGCTGGGTCCCGGATGTTTGTGACAATGATTCGGGCATCTGCTGGACTGGGGCTCATTTTTGCTGGAAGACAATTACACTCTTGTTCTTTGAAGACAGGTGTAGGTGGAGATGTTTTTGTGGCTTGTGCACTGATTGACATGTACAGTAAGTGTGGGAGCATTGAAGATGCTCAGTGTGTTTTCGATCAGATGCCAGAGAAGACCACAGTAGGATGGAATTCCATTATTGCGGGTTATGCACTTCATGGTTATAGCGAGGAAGCATTGAGTATGTATTATGAAATGCGGGATTCTGGCGTCAAAATAGACAATTTCACTTTTTCAATTATTATAAGAATATGTGCTAGGTTAGCTTCATTAGAACATGCTAAGCAAGCTCATGCAGGTCTAGTTCGTCATGGTTTTGGTTTAGATATTGTAGCTAACACAGCGCTTGTGGACTTGTATAGCAAATGGGGAAGGATTGAAGATGCGAAGCATGTTTTTGACATGATGCCTCACAAGAATGTCATATCTTGGAATGCCTTGATTGCGGGTTATGGTAATCATGGTCGAGGAGTTGAGGCTGTTGAGATGTTTGAACGGATGCTTCATGAAGGAATGGTGCCTAACCATGTCACTTTTCTTGCTGTTCTGTCTGCTTGTAGCTATTCAGGTTTATCAGATCGTGGTTGGGAGATTTTTGAATCGATGAGTAGGGATCACAAGATTAAGCCCCGAGCAATGCACTATGCTTGTATGATTGAATTATTGGGTCGAGAAGGGCTTTTGGATGAAGCCTTTGCATTGATAAAAGATGCTCCTTTTAAGCCTACAGTGAATATGTGGGCTGCCTTGCTGACAGCTTGTAGGGTGCACAAGAATTTTGAGCTCGGAAAATTTGCTGCTGAGAAACTTTATGGAATGGGGCCTGAAAAGCTGAGTAATTATGTTGTGCTTTTGAATATATATAACAGGTCTGGCAGGTTGGAGGAAGCTGCTGCTTTGATGCTGGAGATCTCAAAACATGGTTATGTTCCCCAGGATAAATTCTTGCTTCCGGATGTCGATGAACAGGAAGAGCGTGTATTGTTGTACCACAGTGAGAAGTTGGCAATTGCTTTTGGGCTTATCAATACTTCAGATTGGACACCATTGCAAATTGTGCAGAGCCATCGGATTTGTGGTGACTGCCATAGTGCAATTAAGTTGATAGCCCTGGTCACTAGACGTGAAATTGTTGTGAGGGATGCTAGCAGATTCCACCATTTCAAAGATGGGAGTTGTTCTTGTGGGGACTACTGGTGA 1974 42.35 MDIPLSRNQNMSMDQIQSNCGLPHLFSVDEILREKSFSQRLLPFNRRKRRTPFSQIRCSSLEQGLQPRPKPKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAALMLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW* 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1017856 1022127 + Vvi17g114 Vvi17g114 778811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g114 657 Gene3D Tetratricopeptide repeat domain 249 363 IPR011990 GO:0005515
Vvi17g114 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 296 IPR002885 -
Vvi17g114 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Vvi17g114 657 Pfam PPR repeat family 297 344 IPR002885 -
Vvi17g114 657 Pfam PPR repeat family 397 444 IPR002885 -
Vvi17g114 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vvi17g114 657 Pfam PPR repeat 272 296 IPR002885 -
Vvi17g114 657 Pfam PPR repeat 473 494 IPR002885 -
Vvi17g114 657 Pfam PPR repeat 175 197 IPR002885 -
Vvi17g114 657 Pfam PPR repeat 199 224 IPR002885 -
Vvi17g114 657 Pfam PPR repeat 539 566 IPR002885 -
Vvi17g114 657 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Vvi17g114 657 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
Vvi17g114 657 TIGRFAM PPR: pentatricopeptide repeat domain 301 332 IPR002885 -
Vvi17g114 657 TIGRFAM PPR: pentatricopeptide repeat domain 372 397 IPR002885 -
Vvi17g114 657 TIGRFAM PPR: pentatricopeptide repeat domain 199 224 IPR002885 -
Vvi17g114 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Vvi17g114 657 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Vvi17g114 657 PANTHER - 1 558 - -
Vvi17g114 657 PANTHER - 558 651 - -
Vvi17g114 657 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 558 - -
Vvi17g114 657 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 558 651 - -
Vvi17g114 657 Pfam DYW family of nucleic acid deaminases 566 657 IPR032867 GO:0008270
Vvi17g114 657 Gene3D Tetratricopeptide repeat domain 415 535 IPR011990 GO:0005515
Vvi17g114 657 Gene3D Tetratricopeptide repeat domain 96 248 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g114 - - - vvi:100257575 1301.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008241 2 3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 32