Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g116 ATGCTGTTGATCTTCTCCAGCTTTGACAACCGGCTCTCGAACATTTCGAATTTGATCGAAACGAAGACGGAGGTGGACCAGTTCGAGGCGGCGGAGAAGGTGATTATGAGGTGGGACTCGAACTCGGAGGCGTCGAGGCACACGCTACCGTGGGACGAGGCGCCGGAGGAGGCCGCCGAGTATTTGGCGGCGGTGGACGAGATCTTGCAGATGACGGAGGATTTGGCGATTCGATCGGACGGCGAGATGATGGATCGCGCCGAGAGTGCACTCCAGGTGGCGATGACGAGGCTGGAGGACGAGTCTGGGTACGAGAAGGAGTGTTGTCAGAAATTGAGTATTGAGGAAGTTCAGAAGATTGAGTGGAGGTCATTGGATGAGAAGATGAAGAAATGGATGCAAGCTGTGAAGATTGTTGTTAGGGTTCTTCTGTGGGGTGAGAAGAGGCTCTGTGACCAAGCTTTTAGTGGCTCCGATTTGATTAAGGAGGTTTGCTTCACTGAGACTGCCAAGAGTTGTGTGATGCAGTTGTTGAATTTCGGTGAGGCTGTTGCCATTGGGAGGAGATCCTCTGAGAAGCTTTTCCGCATACTCGATATGTATGATGCCTTGGCAGATGTGTTGCCAGACTTGGAAGCCTTGTTTTCAGATGAGTCGGGGCAGTTTGTCTGGAGTGAGGCCCGAGGAGTGCTGGCAGGCCTGGGGGAAGCGGCAAAGGGAACGTTTGCAGAGTTTGAGAATGCAGTTCGCTCTGAGACATCCAGGAGACCCATTCAAGGTGGAAATACACCCCCAATTGGGCGTAGGTTGTTGTTGTTGATGTCATGCCTGGAATCCAACCTCACAGAGAAATCGAAGCTTTACGAGGATAATGCAATGCAATATATTTTCTTGATGAACAACATTCTTTACATAGTTCAGAAAGTGAAAGACTCTGAGCTTGGCAAGATTTTGGGAGATCACTGGGTCCGGAAGCGTCGTGGACAGATTCGCCAATATGCCACTAGTTATCTCAGAGCTTCATGGAGCAAGGTCCTGGCTTGTCTCAAGGATGAAGGCATTGGTGGGAGCTCAAGCAATGCCTCCAAGATGGCCCTTAAAGAAAGATTTAAAAATTTCAATGCATGCTTCGAAGATATTTATAGGATCCAGACAGCTTGGAAGGTCCATGATGCCCAACTCAGGGAAGAGCTTCGAATTTCTATATCAGAAAAGGTAATTCCCGCCTACCGTTCATTTATGGGTAGGTTTGGGAATAATCTAGAGAGTGGAAGAAATGCTGGAAAGTACATCAAATACACACCTGAGGATCTAGAGAACTACTTGTTGGATTTATTCGAAGGATCATCCCTTGTTCTGCACCATATGAGAAGAAAAACTGCATAG 1386 48.41 MLLIFSSFDNRLSNISNLIETKTEVDQFEAAEKVIMRWDSNSEASRHTLPWDEAPEEAAEYLAAVDEILQMTEDLAIRSDGEMMDRAESALQVAMTRLEDESGYEKECCQKLSIEEVQKIEWRSLDEKMKKWMQAVKIVVRVLLWGEKRLCDQAFSGSDLIKEVCFTETAKSCVMQLLNFGEAVAIGRRSSEKLFRILDMYDALADVLPDLEALFSDESGQFVWSEARGVLAGLGEAAKGTFAEFENAVRSETSRRPIQGGNTPPIGRRLLLLMSCLESNLTEKSKLYEDNAMQYIFLMNNILYIVQKVKDSELGKILGDHWVRKRRGQIRQYATSYLRASWSKVLACLKDEGIGGSSSNASKMALKERFKNFNACFEDIYRIQTAWKVHDAQLREELRISISEKVIPAYRSFMGRFGNNLESGRNAGKYIKYTPEDLENYLLDLFEGSSLVLHHMRRKTA* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1030105 1032033 + Vvi17g116 Vvi17g116 778813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g116 461 SUPERFAMILY Cullin repeat-like 26 447 IPR016159 -
Vvi17g116 461 Pfam Exo70 exocyst complex subunit 265 443 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vvi17g116 461 PANTHER EXOCYST COMPLEX PROTEIN EXO70 17 101 IPR004140 GO:0000145|GO:0006887
Vvi17g116 461 PANTHER EXOCYST COMPLEX PROTEIN EXO70 265 460 IPR004140 GO:0000145|GO:0006887
Vvi17g116 461 PANTHER EXOCYST COMPLEX PROTEIN EXO70 110 268 IPR004140 GO:0000145|GO:0006887
Vvi17g116 461 Gene3D Exocyst complex component Exo70 33 269 - -
Vvi17g116 461 Gene3D Exocyst complex component Exo70 270 453 - -
Vvi17g116 461 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 17 101 - -
Vvi17g116 461 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 110 268 - -
Vvi17g116 461 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 265 460 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g116 K07195 - vvi:100268151 676.011