Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g116 ATGCTGTTGATCTTCTCCAGCTTTGACAACCGGCTCTCGAACATTTCGAATTTGATCGAAACGAAGACGGAGGTGGACCAGTTCGAGGCGGCGGAGAAGGTGATTATGAGGTGGGACTCGAACTCGGAGGCGTCGAGGCACACGCTACCGTGGGACGAGGCGCCGGAGGAGGCCGCCGAGTATTTGGCGGCGGTGGACGAGATCTTGCAGATGACGGAGGATTTGGCGATTCGATCGGACGGCGAGATGATGGATCGCGCCGAGAGTGCACTCCAGGTGGCGATGACGAGGCTGGAGGACGAGTCTGGGTACGAGAAGGAGTGTTGTCAGAAATTGAGTATTGAGGAAGTTCAGAAGATTGAGTGGAGGTCATTGGATGAGAAGATGAAGAAATGGATGCAAGCTGTGAAGATTGTTGTTAGGGTTCTTCTGTGGGGTGAGAAGAGGCTCTGTGACCAAGCTTTTAGTGGCTCCGATTTGATTAAGGAGGTTTGCTTCACTGAGACTGCCAAGAGTTGTGTGATGCAGTTGTTGAATTTCGGTGAGGCTGTTGCCATTGGGAGGAGATCCTCTGAGAAGCTTTTCCGCATACTCGATATGTATGATGCCTTGGCAGATGTGTTGCCAGACTTGGAAGCCTTGTTTTCAGATGAGTCGGGGCAGTTTGTCTGGAGTGAGGCCCGAGGAGTGCTGGCAGGCCTGGGGGAAGCGGCAAAGGGAACGTTTGCAGAGTTTGAGAATGCAGTTCGCTCTGAGACATCCAGGAGACCCATTCAAGGTGGAAATACACCCCCAATTGGGCGTAGGTTGTTGTTGTTGATGTCATGCCTGGAATCCAACCTCACAGAGAAATCGAAGCTTTACGAGGATAATGCAATGCAATATATTTTCTTGATGAACAACATTCTTTACATAGTTCAGAAAGTGAAAGACTCTGAGCTTGGCAAGATTTTGGGAGATCACTGGGTCCGGAAGCGTCGTGGACAGATTCGCCAATATGCCACTAGTTATCTCAGAGCTTCATGGAGCAAGGTCCTGGCTTGTCTCAAGGATGAAGGCATTGGTGGGAGCTCAAGCAATGCCTCCAAGATGGCCCTTAAAGAAAGATTTAAAAATTTCAATGCATGCTTCGAAGATATTTATAGGATCCAGACAGCTTGGAAGGTCCATGATGCCCAACTCAGGGAAGAGCTTCGAATTTCTATATCAGAAAAGGTAATTCCCGCCTACCGTTCATTTATGGGTAGGTTTGGGAATAATCTAGAGAGTGGAAGAAATGCTGGAAAGTACATCAAATACACACCTGAGGATCTAGAGAACTACTTGTTGGATTTATTCGAAGGATCATCCCTTGTTCTGCACCATATGAGAAGAAAAACTGCATAG 1386 48.41 MLLIFSSFDNRLSNISNLIETKTEVDQFEAAEKVIMRWDSNSEASRHTLPWDEAPEEAAEYLAAVDEILQMTEDLAIRSDGEMMDRAESALQVAMTRLEDESGYEKECCQKLSIEEVQKIEWRSLDEKMKKWMQAVKIVVRVLLWGEKRLCDQAFSGSDLIKEVCFTETAKSCVMQLLNFGEAVAIGRRSSEKLFRILDMYDALADVLPDLEALFSDESGQFVWSEARGVLAGLGEAAKGTFAEFENAVRSETSRRPIQGGNTPPIGRRLLLLMSCLESNLTEKSKLYEDNAMQYIFLMNNILYIVQKVKDSELGKILGDHWVRKRRGQIRQYATSYLRASWSKVLACLKDEGIGGSSSNASKMALKERFKNFNACFEDIYRIQTAWKVHDAQLREELRISISEKVIPAYRSFMGRFGNNLESGRNAGKYIKYTPEDLENYLLDLFEGSSLVLHHMRRKTA* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1030105 1032033 + Vvi17g116 Vvi17g116 778813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g116 461 SUPERFAMILY Cullin repeat-like 26 447 IPR016159 -
Vvi17g116 461 Pfam Exo70 exocyst complex subunit 265 443 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vvi17g116 461 PANTHER EXOCYST COMPLEX PROTEIN EXO70 17 101 IPR004140 GO:0000145|GO:0006887
Vvi17g116 461 PANTHER EXOCYST COMPLEX PROTEIN EXO70 265 460 IPR004140 GO:0000145|GO:0006887
Vvi17g116 461 PANTHER EXOCYST COMPLEX PROTEIN EXO70 110 268 IPR004140 GO:0000145|GO:0006887
Vvi17g116 461 Gene3D Exocyst complex component Exo70 33 269 - -
Vvi17g116 461 Gene3D Exocyst complex component Exo70 270 453 - -
Vvi17g116 461 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 17 101 - -
Vvi17g116 461 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 110 268 - -
Vvi17g116 461 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 265 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g116 K07195 EXOC7, EXO70; exocyst complex component 7 - vvi:100268151 676.011
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g774 . 1 645 EXO70 exocyst subunit family AT5G03540 79.3 1.2e-295 1012.3
Vvi8g903 . 1 649 EXO70 exocyst subunit family AT5G03540 73.1 7.1e-275 943.3
Vvi8g903 . 1 649 EXO70 exocyst subunit family AT5G52340 76.7 1.4e-288 988.8
Vvi13g774 . 1 645 EXO70 exocyst subunit family AT5G52340 75.2 5.9e-279 956.8
Vvi8g903 . 145 644 EXO70 exocyst subunit family AT5G52350 60.6 2.9e-171 599.0
Vvi13g774 . 139 644 EXO70 exocyst subunit family AT5G52350 59.1 1.2e-164 577.0
Vvi6g709 . 74 616 EXO70 exocyst subunit family AT5G58430 70.1 2.0e-234 808.9
Vvi6g709 . 68 616 EXO70 exocyst subunit family AT1G07000 55.4 5.0e-171 598.2
Vvi9g67 . 9 583 EXO70 exocyst subunit family AT1G72470 66.7 3.7e-225 778.1
Vvi9g67 . 9 579 EXO70 exocyst subunit family AT1G54090 63.8 8.8e-219 756.9
Vvi9g67 . 1 580 EXO70 exocyst subunit family AT3G14090 63.6 4.1e-224 774.6
Vvi17g116 . 1 460 EXO70 exocyst subunit family AT5G50380 50.2 5.8e-155 545.0
Vvi4g196 ECH 6 626 EXO70 exocyst subunit family AT4G31540 72.6 1.5e-275 945.7
Vvi9g976 ECH 8 637 EXO70 exocyst subunit family AT4G31540 57.9 1.1e-211 733.4
Vvi9g974 ECH 8 615 EXO70 exocyst subunit family AT4G31540 51.8 2.0e-187 652.9
Vvi8g639 . 112 675 EXO70 exocyst subunit family AT3G09520 56.6 3.0e-182 635.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74